View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_high_11 (Length: 372)
Name: NF5387_high_11
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 30289460 - 30289805
Alignment:
| Q |
20 |
ctatcagcttaacaacatgggaaagggtcatacccgcatatggaggagaaccagaatctttccttaataatgttgtcacacctatatacgatgttataaa |
119 |
Q |
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| T |
30289460 |
ctatcagcttaacaacatgggaaagggtcatacccgcatatggaggagaaccagaatctttccttaataatgttgtcacacctatatacgatgttataaa |
30289559 |
T |
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| Q |
120 |
aaaggtactgtctaatgcatcctatttttgtttctttgtctgttttcttcaatttaactaatatatctccaaacaataggaagttgaaaatagcaaaggt |
219 |
Q |
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| T |
30289560 |
aaaggtactgtctaatgcatcctatttttgtttctttgtctgttttcttcaatttaactaatatatctccaaacaataggaagttgaaaatagcaaaggt |
30289659 |
T |
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| Q |
220 |
gggacaacggaccattctgcatggagaaactatgatgatctgaatgaatacttctggtcagtagtataacctttaaaccaatattttctagttgttttca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30289660 |
gggacaacggaccattctgcatggagaaactatgatgatctgaatgaatacttctggtcagtagtataacctttagaccaatattttctagttgttttca |
30289759 |
T |
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| Q |
320 |
tgtggcctatgaagcactgacacatacacaggacacgacacggaca |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30289760 |
tgtggcctatgaagcactgacacatacacaggacacgacactgaca |
30289805 |
T |
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