View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5387_high_18 (Length: 296)
Name: NF5387_high_18
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 35072970 - 35072696
Alignment:
| Q |
5 |
tgtcgaagaatatgaatcgaaattgtagcatttccaccatttcctccatcaaaaccgtgaagatcactatgatcaccactgctctggctttgcaactcac |
104 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072970 |
tgtcgaagaacatgaatcgaaatcgtagcatttccaccatttcctccatcaaaaccgtgaagatcactatgatcaccactgctctggctttgcaactcac |
35072871 |
T |
|
| Q |
105 |
tcgaagcaccaccatatccatttgaaacactcgcaagatcgagtttgacatttccttccccattttcaggattaccaaccctagcaaatctccgaagccc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072870 |
tcgaagcaccaccatatccatttgaaacactcgcaagatcgagtttgacatttccttccccattttcaggattaccaaccctagcaaatctccgaagccc |
35072771 |
T |
|
| Q |
205 |
ctttctggaataacacttccaagaaaaccatgnnnnnnnaacaacaaaacccacaacaataagcactattattat |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072770 |
ctttctggaataacacttccaagaaaaccatgcccccccaacaacaaaacccacaacaataagcactattattat |
35072696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University