View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_high_19 (Length: 266)
Name: NF5387_high_19
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_high_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 10976166 - 10975907
Alignment:
| Q |
7 |
gcagcacagaccaagaaaaaccaagcaacgatgtaaactcaaatctaaaagcattctcagcagcactagcactctcatcaatcctcatctcatcaccact |
106 |
Q |
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| T |
10976166 |
gcagcacaaaccaagaaaaaccaaccaacgatgtaaactcaaatctaaaagcattctcagcagcactagcactctcatcaatcctcatctcatcaccact |
10976067 |
T |
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| Q |
107 |
ccccgctgtcgccgacatctccggtctaacaccatgcagagaatcaaaacaattcgccaaacgtgagaaacaatcaatcaaaaagcttgaatcatccctc |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10976066 |
ccccgctgtcgccgacatctccggcctaacaccatgcagagaatcaaaacaattcgccaaacgtgagaaacaatcaatcaaaaagcttgaatcatcactc |
10975967 |
T |
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| Q |
207 |
aagctttacgctccggacagtgctccagcgctggccataaaagcaacagttgagaaaacc |
266 |
Q |
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| T |
10975966 |
aagctttacgctccggacagcgctccagcgctggccataaaagcaacagttgagaaaacc |
10975907 |
T |
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