View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5387_high_2 (Length: 661)
Name: NF5387_high_2
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 45 - 648
Target Start/End: Complemental strand, 43713482 - 43712879
Alignment:
| Q |
45 |
tcaaatgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacatcctcgtggtactacca |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43713482 |
tcaaatgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacatcctcgtggtactacca |
43713383 |
T |
|
| Q |
145 |
aggccagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatattac |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43713382 |
aggccagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatattac |
43713283 |
T |
|
| Q |
245 |
atataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcaaaaatgagcatagcgaatggagg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43713282 |
atataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcgaaaatgagcatagcgaatggagg |
43713183 |
T |
|
| Q |
345 |
aaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaggcaaaaagcattaacaagcaatatttttaaata |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43713182 |
aaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaagcaaaaagcattaacaagcaatatttttaaata |
43713083 |
T |
|
| Q |
445 |
ttttccaaatgacaaagttccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttcccaggaaggaaacagtaagcaatccatgaacaagaga |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43713082 |
ttttccaaatgacaaagttccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaagcaatccatgaacaagaga |
43712983 |
T |
|
| Q |
545 |
agctatatgtaaggattagtcaaatccttaaccaagggatttagcttcccctcttatttatttattaggattatgattccgttagttacgaaatttgtgt |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43712982 |
agctatatgtaaggattagtcaaatccttaaccaagggatttagcttcccctcttatttatttattaggattatgattccgttagttacgaaatttgtgt |
43712883 |
T |
|
| Q |
645 |
ccct |
648 |
Q |
| |
|
|||| |
|
|
| T |
43712882 |
ccct |
43712879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 428 - 648
Target Start/End: Complemental strand, 42572412 - 42572183
Alignment:
| Q |
428 |
agcaatatttttaaatattttccaaatgacaaagt-tccatactcaagcaaatgtaaactgtgtctgtgtccaagtacttcccaggaaggaaacagtaag |
526 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42572412 |
agcaatatttttaaataatttccaaatgacaaaaaatccatactcaagcaac-gtaaactgtgtctgtgtccaagtacttgccaggaaggaaacagtaag |
42572314 |
T |
|
| Q |
527 |
caatccatgaacaagagaagctat-----atgtaaggattagtcaaatccttaaccaagggatttagcttcccctc----ttatttatttattaggatta |
617 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||| ||||| || | |||||||||||||||||||| |
|
|
| T |
42572313 |
caatccatgaacaaaagaagctataattaatgtaaggattagtcaaatacttaatcaagggattttgcttctccccttatttatttatttattaggatta |
42572214 |
T |
|
| Q |
618 |
tgattccgttagttacgaaatttgtgtccct |
648 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |
|
|
| T |
42572213 |
tgattccattagttaagaaatttgtgtccct |
42572183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 409 - 593
Target Start/End: Complemental strand, 42597667 - 42597480
Alignment:
| Q |
409 |
gaggcaaaaagcattaacaag-caatatttttaaatattttccaaatgacaaag--ttccatactcaagcaaatgtaaactgtgtctgtgtccaagtact |
505 |
Q |
| |
|
|||||||||||||| || || || |||||||||||| | | ||||||||||| ||||||||||||||||||||| | ||||| |||||||||||| | |
|
|
| T |
42597667 |
gaggcaaaaagcataaaaaaaacattatttttaaataatattcaaatgacaaaaaattccatactcaagcaaatgtagattgtgt-tgtgtccaagtatt |
42597569 |
T |
|
| Q |
506 |
tcccaggaaggaaacagtaagcaatccatgaacaagagaagcta-----tatgtaaggattagtcaaatccttaaccaagggatttagcttcc |
593 |
Q |
| |
|
| || |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
42597568 |
t----ggcaggaaacattaagcaatccatgaaaaagagaagctagaattcatgtaaggattagtcaaatccttaaccgagggatttaccttcc |
42597480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 42572532 - 42572471
Alignment:
| Q |
190 |
ttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatattacatataat |
251 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
42572532 |
ttcaatgtcatgatacctgatcagaaattaattgaaaattaaaccgtgatgttacatataat |
42572471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 52894297 - 52894351
Alignment:
| Q |
29 |
gaggttcccattgatttcaaatgatgttggattcaggaaactgtggagtttagcg |
83 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
52894297 |
gaggttcccattgatttcagaggatgttggattcaggaaactgtggagtttagcg |
52894351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University