View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_high_29 (Length: 215)
Name: NF5387_high_29
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_high_29 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 2083 - 2289
Alignment:
| Q |
1 |
aaattcttagtgcttgttgtataccagctctcatattctctttgtcgattgaattcaatttgtagctgattcttccctctgttgttacttgtccaccagc |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2083 |
aaattcttagtgcttgttgtataccggctctcatattctctttgtcgattgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagc |
2182 |
T |
|
| Q |
101 |
tttgtctcttattattgttatgaaatgtgcagttcttggataatttagcattctttgtttgtagtctagtcctgattcccatggatatagtgctgaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2183 |
tttgtctcttattattgttatgaaatgtgctgttcttggataatttagcattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaat |
2282 |
T |
|
| Q |
201 |
gatgatg |
207 |
Q |
| |
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||||||| |
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| T |
2283 |
gatgatg |
2289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 31333841 - 31333635
Alignment:
| Q |
1 |
aaattcttagtgcttgttgtataccagctctcatattctctttgtcgattgaattcaatttgtagctgattcttccctctgttgttacttgtccaccagc |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31333841 |
aaattcttagtgcttgttgtataccggctctcatattctctttgtcgattgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagc |
31333742 |
T |
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| Q |
101 |
tttgtctcttattattgttatgaaatgtgcagttcttggataatttagcattctttgtttgtagtctagtcctgattcccatggatatagtgctgaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31333741 |
tttgtctcttattattgttatgaaatgtgctgttcttggataatttagcattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaat |
31333642 |
T |
|
| Q |
201 |
gatgatg |
207 |
Q |
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||||||| |
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| T |
31333641 |
gatgatg |
31333635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 31321587 - 31321382
Alignment:
| Q |
2 |
aattcttagtgcttgttgtataccagctctcatattctctttgtcgattgaattcaatttgtagctgattcttccctctgttgttacttgtccaccagct |
101 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
31321587 |
aattcttagtccttgttgtaaaccagctctcatattctctctgtcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgct |
31321488 |
T |
|
| Q |
102 |
ttgtctcttattattgttatgaaatgtgcagttcttggataatttagcattctttgtttgtagtctagtcctgattcccatggatatagtgctgaaaatg |
201 |
Q |
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||||||||||||||||| || || ||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| || || ||||| |
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| T |
31321487 |
ttgtctcttattattgtgattaagtgtgctgttcttggatattttagcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatg |
31321388 |
T |
|
| Q |
202 |
atgatg |
207 |
Q |
| |
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|||||| |
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|
| T |
31321387 |
atgatg |
31321382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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