View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_high_4 (Length: 539)
Name: NF5387_high_4
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 10647384 - 10646935
Alignment:
| Q |
1 |
ttatgctgaagcttgacttcatccaccctccacctattagattccactacgctcaatctaatcattgctagacagcctgttcgtgtttctttcctacgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10647384 |
ttatgctgaagcttgacttcatccaccctccacctattagattccactactctcaatctaatcattgctagacagcctgttcgtgtttctttcctacgac |
10647285 |
T |
|
| Q |
101 |
tattagcttctttaattgttttgaaaccttcacagctacaacacaagacagcaccacgcttctctttactgttacgtttggtccacgaagatttaacccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10647284 |
tattagcttctttaattgttttgaaaccttcacagctacaacacaagacagcaccacgcttctctttactgttacgtttggtccacgaagatttaacccg |
10647185 |
T |
|
| Q |
201 |
aatagcaaatccaatatccctggcatggctattataatagttgtaggcatcatcataagtttcaaactccaatccctcaacaggttgggcgtagtcattt |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10647184 |
aatagcaaatccaatatccctggcatagctattataatagttgtaggcatcatcataagtttcaaactccaatccctcaacaggttgggcgtagtcattt |
10647085 |
T |
|
| Q |
301 |
gttctttgagattcttcactatgactgtcaa-gctcgt------cgccctt--gtcctcaacctcaagtagttgcttactttgtggagatccctcatcta |
391 |
Q |
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||||||||||||||||||||||||||||||| | ||| | ||||| | |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10647084 |
gttctttgagattcttcactatgactgtcaactcccgtggtttcctcccttccattttcaagctcaagtagttgcttactttgtggagatccctcatcta |
10646985 |
T |
|
| Q |
392 |
tctggaaatagtaatgaaatnnnnnnnncaaattctaaacacaatctaag |
441 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
10646984 |
tctggaaatagtaatgaaataaaaaaaacaaattctaaacacaatctaag |
10646935 |
T |
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