View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_low_10 (Length: 412)
Name: NF5387_low_10
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 405
Target Start/End: Complemental strand, 8375214 - 8374807
Alignment:
| Q |
3 |
agttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgtcctcaatgaacataaat |
102 |
Q |
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| T |
8375214 |
agttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgtcctcaaagaacataaat |
8375115 |
T |
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| Q |
103 |
tagctgctgctgagatttgtaaacaaaccatgtcttg-----atgtgaattgagagctgaaaaaatttgtgtatgaattgtagatgagagtttattgttt |
197 |
Q |
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| T |
8375114 |
tagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgtgtatgaattgtagatgagagtttattgttt |
8375015 |
T |
|
| Q |
198 |
tannnnnnngataaaagatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagat |
297 |
Q |
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| T |
8375014 |
tatttttttgataaaagatgagagtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagat |
8374915 |
T |
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| Q |
298 |
gggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctctaattaataaatttcaacaagtttggctgc |
397 |
Q |
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| T |
8374914 |
gggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttctatgtattctctaattaataaatttcaacaagtttggctgc |
8374815 |
T |
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| Q |
398 |
ctttgctt |
405 |
Q |
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| T |
8374814 |
cttggctt |
8374807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 8439889 - 8440083
Alignment:
| Q |
3 |
agttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgtcctcaatgaacataaat |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8439889 |
agttttcttgtttttgataattgtggaattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgtcctcaaagaacataaat |
8439988 |
T |
|
| Q |
103 |
tagctgctgctgagatttgtaaacaaacca-----tgtcttgatgtgaattgagagctgaaaaaatttgtgtatgaattgtagatgagagtttat |
192 |
Q |
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| T |
8439989 |
tagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagcttaaaaaatttgtgtatgaattgtagatgagagtttat |
8440083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 8417946 - 8418059
Alignment:
| Q |
29 |
aattgataaattagacaaacttggtagttttggaagatggatagcagcattaactgtcctcaatgaacataaattagctgctgctgagatttgtaaacaa |
128 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||| || | |
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| T |
8417946 |
aattgagaaattagacaaacttgggagttttggaagatggataacagcattaactgtcctcaaagaagataaattagctgctgctgagaattgtatacta |
8418045 |
T |
|
| Q |
129 |
accatgtcttgatg |
142 |
Q |
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||||||| |||||| |
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| T |
8418046 |
accatgtattgatg |
8418059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 213 - 380
Target Start/End: Original strand, 8440070 - 8440230
Alignment:
| Q |
213 |
agatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatga |
312 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||| | |
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| T |
8440070 |
agatgagagtttatgaaaacaatgaatgggagtgggtggtatatatatagatag-ggaagagaatggatcaaaactagaatagatgggaagaagtcacaa |
8440168 |
T |
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| Q |
313 |
gcaaccgtaacattagattagacttggcctttttattgac-tttctatgtattctctaattaataaatt |
380 |
Q |
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| T |
8440169 |
ctaaccgta-----agattagacttggcctttttattgacttttctatgtat--tctaattaataaatt |
8440230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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