View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5387_low_15 (Length: 336)

Name: NF5387_low_15
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5387_low_15
NF5387_low_15
[»] chr8 (14 HSPs)
chr8 (71-256)||(6264927-6265112)
chr8 (17-201)||(6290450-6290634)
chr8 (17-201)||(6353542-6353726)
chr8 (55-201)||(6425270-6425416)
chr8 (71-201)||(6364469-6364599)
chr8 (64-201)||(6275745-6275882)
chr8 (68-199)||(6371297-6371428)
chr8 (71-201)||(7460668-7460798)
chr8 (68-195)||(6392089-6392216)
chr8 (68-156)||(6411253-6411341)
chr8 (64-201)||(6322606-6322743)
chr8 (64-201)||(6333173-6333310)
chr8 (248-315)||(6265155-6265224)
chr8 (79-160)||(6452174-6452255)
[»] chr2 (2 HSPs)
chr2 (74-198)||(42694391-42694515)
chr2 (74-201)||(42687139-42687266)
[»] chr5 (1 HSPs)
chr5 (79-201)||(9603046-9603168)
[»] chr3 (2 HSPs)
chr3 (77-150)||(36743945-36744018)
chr3 (79-147)||(35722304-35722372)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 7e-77; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 71 - 256
Target Start/End: Original strand, 6264927 - 6265112
Alignment:
Q  71 tcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtctat 170  Q
    ||||| ||||||||||| ||||| |||||||| | ||| |||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  6264927 tcacccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactctaattgtctat 6265026  T
Q  171 agtagacaagtggagcaggtgtttcacttggtagaaaagtctgcaatatattttatgtatttgatgttacacactttaagattttt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6265027 agtagacaagtggagcaggtgtttcacttggtagaaaagtctgcaatatattttatgtatttgatgttacacactttaagattttt 6265112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 6290450 - 6290634
Alignment:
Q  17 aaattgctcgatcccccacgaatttgacgcgccaactgaggtttcgagtcaggttcacctaaatcattgtagacatcgtaatcatatattctttcccatt 116  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6290450 aaattgctcgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacctaaatcattgtagacatcgtaatcatatattctttcccatt 6290549  T
Q  117 ccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtctatagtagacaagtggagcaggtgtttcacttgg 201  Q
    |||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||| || | |||||| ||||||||||||||    
T  6290550 ccttgcgctctcctgttccatctcctcttaaagtcttcaattcttcttgtctatagtacactaatggagctggtgtttcacttgg 6290634  T

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Target: chr8; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 6353542 - 6353726
Alignment:
Q  17 aaattgctcgatcccccacgaatttgacgcgccaactgaggtttcgagtcaggttcacctaaatcattgtagacatcgtaatcatatattctttcccatt 116  Q
    |||| ||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  6353542 aaatcgcttgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcattgtagacatcgtaatcatatattctttcccatt 6353641  T
Q  117 ccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtctatagtagacaagtggagcaggtgtttcacttgg 201  Q
    |||||||||||||  ||||||||||||||||||||||||| |||  |||||| ||||| || | |||||| ||||||||||||||    
T  6353642 ccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagtacactaatggagccggtgtttcacttgg 6353726  T

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Target: chr8; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 55 - 201
Target Start/End: Original strand, 6425270 - 6425416
Alignment:
Q  55 aggtttcgagtcaggttcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttc 154  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||    
T  6425270 aggtttcgagtcaggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttc 6425369  T
Q  155 aactctaattgtctatagtagacaagtggagcaggtgtttcacttgg 201  Q
    ||||||  |||||||||||| || | |||||| ||||||||||||||    
T  6425370 aactcttcttgtctatagtacaccaatggagccggtgtttcacttgg 6425416  T

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Target: chr8; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 6364469 - 6364599
Alignment:
Q  71 tcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtctat 170  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| |||  |||||| |    
T  6364469 tcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgt 6364568  T
Q  171 agtagacaagtggagcaggtgtttcacttgg 201  Q
    ||||||| |  ||||| ||||||||||||||    
T  6364569 agtagactaaaggagctggtgtttcacttgg 6364599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 6275745 - 6275882
Alignment:
Q  64 gtcaggttcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaat 163  Q
    |||||| ||||| | |||||||||||||||||| ||||| || ||||||||||| || ||||||||| ||||||||||||||||||| |||||||||  |    
T  6275745 gtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttct 6275844  T
Q  164 tgtctatagtagacaagtggagcaggtgtttcacttgg 201  Q
    |||||||||||||| | |||||  ||||||||||||||    
T  6275845 tgtctatagtagactaatggaggtggtgtttcacttgg 6275882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 6371297 - 6371428
Alignment:
Q  68 ggttcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtc 167  Q
    |||||||| |||||||||||||||||||| ||||| || || |||||||| |||||||| ||  |||||||||||||||||||||||||||||  |||||    
T  6371297 ggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactcttcttgtc 6371396  T
Q  168 tatagtagacaagtggagcaggtgtttcactt 199  Q
    | |||||||| | |||||| ||||||||||||    
T  6371397 tgtagtagactaatggagctggtgtttcactt 6371428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 7460668 - 7460798
Alignment:
Q  71 tcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtctat 170  Q
    ||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| |||  |||||| |    
T  7460668 tcacccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttcttgtctgt 7460767  T
Q  171 agtagacaagtggagcaggtgtttcacttgg 201  Q
    |||| || | |||||| |||||| |||||||    
T  7460768 agtacactaatggagctggtgttgcacttgg 7460798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 6392089 - 6392216
Alignment:
Q  68 ggttcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtc 167  Q
    |||| ||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||  ||||||||||||||||||| ||||| |||  |||||    
T  6392089 ggttgacccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtc 6392188  T
Q  168 tatagtagacaagtggagcaggtgtttc 195  Q
    | ||||| |  | |||||| ||||||||    
T  6392189 tgtagtacagtaatggagctggtgtttc 6392216  T

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Target: chr8; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 6411253 - 6411341
Alignment:
Q  68 ggttcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaa 156  Q
    |||| ||| ||||||||||||||||| |||||||||||||| |||||| |||| ||||||||  |||||||||||||||||||||||||    
T  6411253 ggttgacccaaatcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaa 6411341  T

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Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 6322606 - 6322743
Alignment:
Q  64 gtcaggttcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaat 163  Q
    |||||| ||||| || |||||||| |||||||| ||||| ||||| ||   |||||||||||  ||  ||||||||||||||||||||||||| |||  |    
T  6322606 gtcaggatcacccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttct 6322705  T
Q  164 tgtctatagtagacaagtggagcaggtgtttcacttgg 201  Q
    | |||||||||||| | |||||| ||||||||||||||    
T  6322706 tctctatagtagactaatggagctggtgtttcacttgg 6322743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 6333173 - 6333310
Alignment:
Q  64 gtcaggttcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaat 163  Q
    |||||| ||||| || |||||||| |||||||| ||||| || || ||| |||| |||||||| ||  ||||||||||||||||||||||||| |||  |    
T  6333173 gtcaggatcacccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattcttct 6333272  T
Q  164 tgtctatagtagacaagtggagcaggtgtttcacttgg 201  Q
    ||||| |||||||| | |||||| |||||||| |||||    
T  6333273 tgtctgtagtagactaatggagctggtgtttcgcttgg 6333310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 6265155 - 6265224
Alignment:
Q  248 aagatttttattattggtatagtat--gagatgataatccatgacatcggttagcttgtttctcaagcaa 315  Q
    |||||||||||||||||||||||||  | |||||||||  ||||||||||||||||||||||||||||||    
T  6265155 aagatttttattattggtatagtatatgtgatgataatgtatgacatcggttagcttgtttctcaagcaa 6265224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 6452174 - 6452255
Alignment:
Q  79 atcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactct 160  Q
    |||||| || ||||| ||||| ||||| || |||||||| ||||| |||||  ||||||||||||||| | ||| |||||||    
T  6452174 atcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactct 6452255  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 42694391 - 42694515
Alignment:
Q  74 cctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtctatagt 173  Q
    |||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||| ||||||||||||||||| | ||||| |||  || |||||| |    
T  42694391 cctaaatcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctctataat 42694490  T
Q  174 agacaagtggagcaggtgtttcact 198  Q
     ||| | |||||| |||||||||||    
T  42694491 ggactaatggagccggtgtttcact 42694515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 42687266 - 42687139
Alignment:
Q  74 cctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtctatagt 173  Q
    |||||||||||||||||||||||||| || || |||||   |  ||||||||||||| |||||||||| |||||| | | ||| |||  || |||||| |    
T  42687266 cctaaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctctatact 42687167  T
Q  174 agacaagtggagcaggtgtttcacttgg 201  Q
     ||| |||||||  ||||||||||||||    
T  42687166 tgactagtggagatggtgtttcacttgg 42687139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 9603168 - 9603046
Alignment:
Q  79 atcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagtcttcaactctaattgtctatagtagaca 178  Q
    ||||||||||||||| |||||||| | |||||||||||| || || | |||  | ||||||||||||| | | | ||| |||  |||||| ||||||||     
T  9603168 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact 9603069  T
Q  179 agtggagcaggtgtttcacttgg 201  Q
    | |||||| ||||||| ||||||    
T  9603068 aatggagctggtgtttgacttgg 9603046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 36744018 - 36743945
Alignment:
Q  77 aaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaaagt 150  Q
    ||||||||||| ||||| |||||||| ||||| ||||||||||  |||| | || |||||||||| ||||||||    
T  36744018 aaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagt 36743945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 35722372 - 35722304
Alignment:
Q  79 atcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctcttccatctcctcttaa 147  Q
    ||||||||||||||| |||||||| ||||| ||  ||| ||| |||||||||  ||||| |||||||||    
T  35722372 atcattgtagacatcataatcatagattctgtctgatttcttacgctctccttctccatttcctcttaa 35722304  T

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