View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_low_16 (Length: 312)
Name: NF5387_low_16
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_16 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 293
Target Start/End: Original strand, 31321614 - 31321901
Alignment:
| Q |
6 |
aggagcacagagaagtggtggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaagga |
105 |
Q |
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| T |
31321614 |
aggaacacacagaagtgatggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaagga |
31321713 |
T |
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| Q |
106 |
gcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaa |
205 |
Q |
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| T |
31321714 |
gcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaa |
31321813 |
T |
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| Q |
206 |
atggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactat |
293 |
Q |
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| T |
31321814 |
atggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgatcactat |
31321901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 293
Target Start/End: Original strand, 31333867 - 31334154
Alignment:
| Q |
6 |
aggagcacagagaagtggtggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaagga |
105 |
Q |
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| T |
31333867 |
aggaacacacagaagtggtggtcagagaattaagtgtaatgagaacaccagtgagaaggaaattgaagagtttatagatagtgtttatccaatggaagga |
31333966 |
T |
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| Q |
106 |
gcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaa |
205 |
Q |
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| T |
31333967 |
gcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaa |
31334066 |
T |
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| Q |
206 |
atggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactat |
293 |
Q |
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| T |
31334067 |
atggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgatcactat |
31334154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 285
Target Start/End: Original strand, 39110404 - 39110548
Alignment:
| Q |
141 |
ttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtt |
240 |
Q |
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| T |
39110404 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
39110503 |
T |
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| Q |
241 |
tgtgatgctagtgttcttccaactgctgttggtgttaatcctatg |
285 |
Q |
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| T |
39110504 |
tgtgatggaagtgttttgcctagtgcagttggtgttaaccctatg |
39110548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 2057 - 2010
Alignment:
| Q |
6 |
aggagcacagagaagtggtggtcagagaattaagtgtaatgagaacac |
53 |
Q |
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| T |
2057 |
aggaacacacagaagtggtggtcagagaattaagtgtaatgagaacac |
2010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 266
Target Start/End: Complemental strand, 33521232 - 33521092
Alignment:
| Q |
126 |
ttggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
225 |
Q |
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||||||| ||||| | |||||||| || ||||| ||||| | || ||| | | ||| |||||||| | |||||||||||||| ||| |||||||||| |
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| T |
33521232 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
33521133 |
T |
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| Q |
226 |
gaagggttgtttgtttgtgatgctagtgttcttccaactgc |
266 |
Q |
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| T |
33521132 |
gaaggactatttgtgtgtgatgcaagtttgtttccaactgc |
33521092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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