View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_low_17 (Length: 308)
Name: NF5387_low_17
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 43061846 - 43062131
Alignment:
| Q |
15 |
aatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaataaaattctacgtatgcaaataccgtaggtagaacctagaacacaac |
114 |
Q |
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| T |
43061846 |
aatttcatcgcaaatcattagaattacagaaaagaaatatttggtaactaaaataaaattctacgtatgcaaataccgtaggtagaacctagaacacaac |
43061945 |
T |
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| Q |
115 |
attgcatttgtcgggcaaaacccgggtgaaggtaaaggttgcattattgtttaatttcaatggaactttgaggtcacatttgaccttaggcttgtatgtg |
214 |
Q |
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| T |
43061946 |
attgcatttttcgggcaaaacccgggtgaaggtaaaggttgcattattgtttgatttcaatggaactttgaggtcacatttgaccttaggcttgtatgtg |
43062045 |
T |
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| Q |
215 |
cgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagataccataaactccaacactcttgcctttgct |
300 |
Q |
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| T |
43062046 |
cgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagataccataaactccaacactcttgtctttgct |
43062131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 43054751 - 43054871
Alignment:
| Q |
171 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
270 |
Q |
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| T |
43054751 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
43054850 |
T |
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| Q |
271 |
accataaactccaacactctt |
291 |
Q |
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| T |
43054851 |
atcataaactccaacattctt |
43054871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 298
Target Start/End: Original strand, 43049217 - 43049344
Alignment:
| Q |
171 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
270 |
Q |
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|||| |||||||||| ||||||||| |||||||||||||| | |||||| | || |||||| ||||||||||||| ||||| ||| |||||||||| |
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| T |
43049217 |
tcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
43049316 |
T |
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| Q |
271 |
accataaactccaacactcttgcctttg |
298 |
Q |
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| T |
43049317 |
atcataaacttcatcactcttgtctttg |
43049344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 43024145 - 43024186
Alignment:
| Q |
250 |
gaagtagagcttcacatagataccataaactccaacactctt |
291 |
Q |
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| T |
43024145 |
gaagtagagtttcacatagatatcataaacttcaacactctt |
43024186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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