View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_low_21 (Length: 274)
Name: NF5387_low_21
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 26042571 - 26042378
Alignment:
| Q |
18 |
cacaaaggacatgagttgcctctattcaaccaacgacgaatgcatttcatatgaaatgtgtgtgataaacacggcatagcgacaccaacgataacatcat |
117 |
Q |
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| T |
26042571 |
cacaaaggacaagagttgcctctattcaaccaacgacggatgcatttcatatgaaatgtgtgtgataaacacggcatagcgacaccaacgataacatcat |
26042472 |
T |
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| Q |
118 |
tcaaacaaatagcacattcttccactttttcaactttcaccacctccaattcatcgatacatgactttgccgcgggaatcaacccattattttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26042471 |
tcaaacaaatagcacattcttccactttttcaactttcaccacctccaattcatcgatacatgactttgccgcgggaatcaacccattattttc |
26042378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 26048884 - 26048694
Alignment:
| Q |
18 |
cacaaaggacatgagttgcctctattcaaccaacgacgaatgcatttcatatgaaatgtgtgtgataaacacggcatagcgacaccaacgataacatcat |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26048884 |
cacaaaggacaagagttgcctctattcaaccaacgacgaatgcatttcatatgaaatgtgtgtgataaacacggcatagcgacaccaatgataacatcat |
26048785 |
T |
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| Q |
118 |
tcaaacaaatagcacattcttccactttttcaactttcaccacctccaattcatcgatacatgactttgccgcgggaatcaacccattatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
26048784 |
tcaaacaaatagcacattcttccactttttcaactttcaccacctccaattcctcgatacatgactttgccgccggaatcaacccattatt |
26048694 |
T |
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