View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_low_23 (Length: 259)
Name: NF5387_low_23
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 310044 - 309794
Alignment:
| Q |
1 |
catcttatatagtttaggaactatgtaggaggtagtggtacttgaagttgaagtctaattgagcgtttactcttatatcttgcttatgtgtgctagctag |
100 |
Q |
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| T |
310044 |
catcttatatagtttagggactatgtaggaggtagtggtacttgaagttgaagtctaattgagcgtttactcttatatcttgcttatgtgtgctagctag |
309945 |
T |
|
| Q |
101 |
ccattgagtctgaaaagttctgtatgcttaattgtttttatatcatttaattttgaatattggatcttctatctatctatctatgaaagctttctcctaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
309944 |
ccattgagtctgaaaagttctgtatgcttaattgtttttttatcatttaattttgaatattggatcttctatctatctgtctatgaaagctttctcctaa |
309845 |
T |
|
| Q |
201 |
ttatggtagaatttcacatttttgtgcgattttttcccttagatctgtgct |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
309844 |
ttatggtagaatttcacatttttgtgcgattttttcccctagatctgtgct |
309794 |
T |
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