View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_low_24 (Length: 255)
Name: NF5387_low_24
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_24 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 114 - 255
Target Start/End: Complemental strand, 2490761 - 2490619
Alignment:
| Q |
114 |
cacttaagggaatccattttggctcaagagattttgacttttcttcatggtaaagaaagagttgaacagccttatattcacttaaaggatttagattatc |
213 |
Q |
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| T |
2490761 |
cacttaagggaatccattttggctcaagagattttgacttttcttcatggtaaagaaagagttgaacagccttatattcacttaaaggatttagattatc |
2490662 |
T |
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| Q |
214 |
gtaagtcataatgctttgtcaaatttcctct-gggttctattt |
255 |
Q |
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| T |
2490661 |
gtaagtcataatgctttgtcaaatttcctctagggttctattt |
2490619 |
T |
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 2490821 - 2490762
Alignment:
| Q |
11 |
catcatcaaactaaaca--aataatggttttcaaaggtgatcaaagcttcaacccttttt |
68 |
Q |
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| T |
2490821 |
catcatcaaactaaacacaaataatggttttcaaaggtgatcaaagcttcaacccttttt |
2490762 |
T |
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