View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_low_26 (Length: 241)
Name: NF5387_low_26
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 39897427 - 39897548
Alignment:
| Q |
16 |
atttgtattatccaacaccaagttcaaagtctaactcaattcacaaatgatagtccgtacattttattaacggaaacgctaagagaaaacaaaccagaac |
115 |
Q |
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| T |
39897427 |
atttgtattattcaacaccaaattcaaagtctaactcagttcacaaatgatagtccatacattttattaacggaaacgctaagagaaaacaaaccagaac |
39897526 |
T |
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| Q |
116 |
tgtatgattacactattacagg |
137 |
Q |
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| T |
39897527 |
tgtatgattacactattacagg |
39897548 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 39897606 - 39897696
Alignment:
| Q |
138 |
aaagaccatcaaccagctcaatgttgccgattatcct---caattcttgtgtctcctggatgt---agaagtgggcgatgaaggtatgtct |
222 |
Q |
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| T |
39897606 |
aaagaccatcaaccagctcaatgttgccaatcatcctcctcaattcttgtgtctcctggatgtagaagaagtgggcgatgaaggtatgtct |
39897696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 39874493 - 39874555
Alignment:
| Q |
139 |
aagaccatcaaccagctcaatgttgccgattatcctcaattcttgtgtctcctggatgtagaa |
201 |
Q |
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| T |
39874493 |
aagaccatcaaccagctcacccttgccaatcatcctcaattttggtgtatcctggatgtagaa |
39874555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 39890002 - 39890080
Alignment:
| Q |
55 |
ttcacaaatgatagtccgtacattttattaacggaaacgctaagagaaaacaaaccagaactgtatgattacactatta |
133 |
Q |
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| T |
39890002 |
ttcacaaacgattgtccatacattttattaatgagaacaccaagagaaaacaaatcaaaactgtatgatgacattatta |
39890080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 39882487 - 39882551
Alignment:
| Q |
59 |
caaatgatagtccgtacattttattaacggaaacgctaagagaaaacaaaccagaactgtatgat |
123 |
Q |
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| T |
39882487 |
caaatgattgtccatacattttattaaccggaacactaaaagaaaacaaatcaaaattgtatgat |
39882551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 41527737 - 41527669
Alignment:
| Q |
55 |
ttcacaaatgatagtccgtacattttattaacggaaacgctaagagaaaacaaaccagaactgtatgat |
123 |
Q |
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| T |
41527737 |
ttcaaaaacgattgtccatacattttattaacgggaacaccaagagaaaacaaatcataactgaatgat |
41527669 |
T |
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