View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5387_low_30 (Length: 232)
Name: NF5387_low_30
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 7422839 - 7423040
Alignment:
| Q |
15 |
caaaaatctcctccatattcaaatcctcttttttcacattattaggtaatctccaattaaatccatgcaacaaattagccaaacttgattgtatcacctt |
114 |
Q |
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||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422839 |
caaaaatctcctccatattcaaatcctctttcttcatatcattaggtaatctccaattaaatccatgcaacaaattagccaaacttgattgtatcacctt |
7422938 |
T |
|
| Q |
115 |
aagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatctatattattaccaataaacctc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422939 |
aagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatctatattattaccaataaacctc |
7423038 |
T |
|
| Q |
215 |
tc |
216 |
Q |
| |
|
|| |
|
|
| T |
7423039 |
tc |
7423040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 7415180 - 7415381
Alignment:
| Q |
15 |
caaaaatctcctccatattcaaatcctcttttttcacattattaggtaatctccaattaaatccatgcaacaaattagccaaacttgattgtatcacctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
7415180 |
caaaaatctcctccatattcaaatcctcctttttcacattattaggtaatgtccaattaaatccatgcaacaaattagccaaacttgtttgaatcacctt |
7415279 |
T |
|
| Q |
115 |
aagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtccttttacatctatattattaccaataaacctc |
214 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||| |
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| T |
7415280 |
aataccaagagggtaaccaggacacatccttctaccagcaccaaatggtaacaactcaaaatcatgtccttttacatctatatctttaccaagaaacctc |
7415379 |
T |
|
| Q |
215 |
tc |
216 |
Q |
| |
|
|| |
|
|
| T |
7415380 |
tc |
7415381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 7429245 - 7429418
Alignment:
| Q |
15 |
caaaaatctcctccatattcaaatcctcttttttcacattattaggtaatctccaattaaatccatgcaacaaattagccaaacttgattgtatcacctt |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |
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| T |
7429245 |
caaaaatctcctccatatttaaatcctcttttttcatatcattaggtaatctccaattaaatccatgcaacaagttagccaaacttgattgaaccacctt |
7429344 |
T |
|
| Q |
115 |
aagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcataatcatgtcctttta |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||| |
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|
| T |
7429345 |
aagaccaagaggataaccaggacacatccttctaccagcacctaatggcaacatcttataatcatgtcctttta |
7429418 |
T |
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