View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5387_low_34 (Length: 214)
Name: NF5387_low_34
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 3801221 - 3801035
Alignment:
| Q |
14 |
cataggtgtggtgtcgtgtgtccaagaccagaacacatctaatccgagaagtgtccatgaacatatatacaaaga--aaaaagagaacagcactaattca |
111 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||| |||||||| || |||||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
3801221 |
cataagtgtggtgtcgtgtgtccgagaccagaacacatctaattcgagaagtatctgtgaacatatatagaaagagaaaaaagagaacaacactaattca |
3801122 |
T |
|
| Q |
112 |
aaacaacaagtaatagattataaatacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccaccttctt |
198 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3801121 |
aaacaacaagtaatagattataaacacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccaccttctt |
3801035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 3788968 - 3789072
Alignment:
| Q |
97 |
aacagcactaattcaaaacaacaag---taatagattataaatacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccacc |
193 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3788968 |
aacaccactaattcaaaacaacaagaaataatagattataaaaacattaataattcgcccaactaataaacttttgaagattatgtgatgactggccacc |
3789067 |
T |
|
| Q |
194 |
ttctt |
198 |
Q |
| |
|
||||| |
|
|
| T |
3789068 |
ttctt |
3789072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University