View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5387_low_36 (Length: 209)

Name: NF5387_low_36
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5387_low_36
NF5387_low_36
[»] chr2 (11 HSPs)
chr2 (3-117)||(8375298-8375412)
chr2 (1-79)||(8394785-8394863)
chr2 (1-79)||(8395028-8395106)
chr2 (1-79)||(8406466-8406544)
chr2 (1-79)||(8412586-8412664)
chr2 (1-79)||(8434684-8434762)
chr2 (3-117)||(8439691-8439805)
chr2 (3-76)||(8417809-8417882)
chr2 (1-70)||(8431614-8431680)
chr2 (159-209)||(8375194-8375244)
chr2 (159-209)||(8439859-8439909)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 8375412 - 8375298
Alignment:
Q  3 ttccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagagcttaataatttcatttgacttct 102  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| |  ||||| |  ||||||||  ||||||||||||    
T  8375412 ttccaattgttacgctgttcgccaatgttttgatgcatttcaactctatcagaaactgcttccaagattgcatataatttaataatagcatttgacttct 8375313  T
Q  103 tattgttgtgtctgt 117  Q
    ||||||| |||||||    
T  8375312 tattgttttgtctgt 8375298  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 8394863 - 8394785
Alignment:
Q  1 tattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8394863 tattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8394785  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 8395106 - 8395028
Alignment:
Q  1 tattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8395106 tattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8395028  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8406466 - 8406544
Alignment:
Q  1 tattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8406466 tattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8406544  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8412586 - 8412664
Alignment:
Q  1 tattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8412586 tattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8412664  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8434684 - 8434762
Alignment:
Q  1 tattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| || ||||||||    
T  8434684 tattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagag 8434762  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 8439691 - 8439805
Alignment:
Q  3 ttccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcatagagcttaataatttcatttgacttct 102  Q
    ||||| ||| |||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| |  ||||| |  ||||||||  ||||||||||||    
T  8439691 ttccaattgctacgctgttcgccaatgttttgatgcatttcaactctatcagaaactgcttccaagattgcatataatttaataatagcatttgacttct 8439790  T
Q  103 tattgttgtgtctgt 117  Q
    ||||||| |||||||    
T  8439791 tattgttttgtctgt 8439805  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 8417809 - 8417882
Alignment:
Q  3 ttccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaacagcata 76  Q
    ||||| ||||||||| |||| | |||||||||||||||||||| ||||||||||||| ||||||| || |||||    
T  8417809 ttccaattgttacgtagttcacaaatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgcata 8417882  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8431614 - 8431680
Alignment:
Q  1 tattccagttgttacgttgttcgccaatgttgtgatgcatttcaactctgtcagaaacagcttccaaaac 70  Q
    ||||||||||||||||||   |||||||||||||||||||||| | |||||| || |||||||| |||||    
T  8431614 tattccagttgttacgtt---cgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaac 8431680  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 8375244 - 8375194
Alignment:
Q  159 tgatctatggttacattaaattcctcaaccagttttcttgtttttgataat 209  Q
    |||||| ||| | |||||||||||||||  |||||||||||||||||||||    
T  8375244 tgatctttggatccattaaattcctcaattagttttcttgtttttgataat 8375194  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 8439859 - 8439909
Alignment:
Q  159 tgatctatggttacattaaattcctcaaccagttttcttgtttttgataat 209  Q
    |||||| ||| | |||||||||||||||  |||||||||||||||||||||    
T  8439859 tgatctttggatccattaaattcctcaattagttttcttgtttttgataat 8439909  T

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