View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5387_low_7 (Length: 437)
Name: NF5387_low_7
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5387_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 22 - 423
Target Start/End: Original strand, 2490193 - 2490595
Alignment:
| Q |
22 |
tttaactaagataaattttgagattggtgaccttagaaagtgtgcgagtgataaccaaacacactgaaaagatttatgttggtttggtaggtcactcgtg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| |
|
|
| T |
2490193 |
tttaactaagataaattttgagattggtgacctcagaaagtgtgcgagtgataaccaaacacattaaaaagatttatgttggtttggtagatcactcgtg |
2490292 |
T |
|
| Q |
122 |
aaagtcatatgagattttacattcatgaaaatagtttaattaatagtaatgagtttataaaatattatatacagtcttgttttctcatattttctctata |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2490293 |
aaagtcatctgagattttacattcatgaaagtaatttaattaatagtaatgagtttataaaatattgtatacagtcttgttttctcatattttctctata |
2490392 |
T |
|
| Q |
222 |
agtatgcttcaccaaattgttcttcccatttcttcaccggaaagcgtgattattttctctatatta-tataaatagtttaattaatagtgatgagtttat |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2490393 |
agtatgcttcaccaaattgttcttcccatttcttcaccggaaagcgtgattattttctctatattactataaatagtttaattaatagtgatgagtttat |
2490492 |
T |
|
| Q |
321 |
gaaaatattggaaattacatttcaagtcttgttcttcttctgtatgttggtaaagaaatgggaagaaaaacatgtaaagccaaaacgtgacaaattctct |
420 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2490493 |
gaaaatattggaaattacatctcaagtcttgttcttcttctgcatgtaggtaaagaaatgggaagaaaaacatgtaaagccaaaacgtgacaaattctct |
2490592 |
T |
|
| Q |
421 |
taa |
423 |
Q |
| |
|
||| |
|
|
| T |
2490593 |
taa |
2490595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University