View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5387_low_8 (Length: 418)

Name: NF5387_low_8
Description: NF5387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5387_low_8
NF5387_low_8
[»] chr8 (14 HSPs)
chr8 (1-400)||(41403944-41404357)
chr8 (1-100)||(14999188-14999287)
chr8 (1-100)||(43801656-43801755)
chr8 (6-100)||(6911046-6911140)
chr8 (1-88)||(6911214-6911301)
chr8 (6-100)||(16324861-16324955)
chr8 (1-89)||(22781238-22781325)
chr8 (6-101)||(22781071-22781166)
chr8 (1-100)||(41722012-41722111)
chr8 (6-100)||(8489390-8489484)
chr8 (47-100)||(15009089-15009142)
chr8 (1-88)||(16325029-16325118)
chr8 (47-100)||(43801487-43801540)
chr8 (1-86)||(40621712-40621797)
[»] chr2 (18 HSPs)
chr2 (1-100)||(22563227-22563326)
chr2 (1-101)||(21265747-21265847)
chr2 (6-100)||(12232580-12232673)
chr2 (6-100)||(22563400-22563494)
chr2 (6-100)||(29892989-29893081)
chr2 (47-100)||(4371471-4371524)
chr2 (6-100)||(21265580-21265673)
chr2 (6-100)||(17200095-17200189)
chr2 (6-100)||(34645736-34645830)
chr2 (6-101)||(20296606-20296701)
chr2 (1-101)||(34645563-34645662)
chr2 (1-94)||(156971-157063)
chr2 (1-94)||(17200263-17200356)
chr2 (65-100)||(33491417-33491452)
chr2 (1-100)||(20296279-20296378)
chr2 (47-75)||(4371554-4371582)
chr2 (48-92)||(4682781-4682825)
chr2 (47-75)||(33491362-33491390)
[»] chr5 (15 HSPs)
chr5 (1-100)||(14076854-14076953)
chr5 (2-100)||(36955480-36955578)
chr5 (6-100)||(8754675-8754769)
chr5 (6-100)||(17370084-17370178)
chr5 (6-100)||(31194155-31194249)
chr5 (1-100)||(31193982-31194081)
chr5 (49-100)||(36955320-36955371)
chr5 (1-81)||(42546385-42546465)
chr5 (6-87)||(42546539-42546620)
chr5 (6-101)||(39634993-39635087)
chr5 (1-95)||(39634827-39634919)
chr5 (49-100)||(32347130-32347181)
chr5 (47-91)||(43449493-43449537)
chr5 (47-100)||(9862223-9862276)
chr5 (1-33)||(32346981-32347013)
[»] chr3 (18 HSPs)
chr3 (1-100)||(4041368-4041467)
chr3 (1-89)||(46883597-46883685)
chr3 (1-100)||(53197005-53197104)
chr3 (6-100)||(43797369-43797463)
chr3 (1-89)||(8799501-8799589)
chr3 (9-100)||(8799334-8799425)
chr3 (1-101)||(29828866-29828966)
chr3 (1-100)||(38499836-38499934)
chr3 (1-100)||(43797537-43797636)
chr3 (47-100)||(53197214-53197267)
chr3 (1-92)||(25349895-25349986)
chr3 (5-100)||(38500011-38500105)
chr3 (6-80)||(46883452-46883526)
chr3 (47-89)||(8657427-8657469)
chr3 (1-80)||(43797680-43797759)
chr3 (6-39)||(29828755-29828788)
chr3 (47-87)||(34937444-34937485)
chr3 (47-84)||(43797872-43797909)
[»] chr7 (14 HSPs)
chr7 (6-100)||(35207195-35207289)
chr7 (1-89)||(48006309-48006397)
chr7 (1-100)||(19318332-19318432)
chr7 (1-100)||(35207363-35207459)
chr7 (1-75)||(6408439-6408513)
chr7 (6-100)||(29474603-29474696)
chr7 (1-100)||(25048208-25048308)
chr7 (49-100)||(39983870-39983921)
chr7 (49-100)||(19318452-19318503)
chr7 (9-100)||(2834392-2834483)
chr7 (9-100)||(35363335-35363426)
chr7 (1-34)||(26903511-26903544)
chr7 (49-90)||(28547512-28547553)
chr7 (47-75)||(39983783-39983811)
[»] chr6 (8 HSPs)
chr6 (1-100)||(16125539-16125638)
chr6 (6-100)||(22748605-22748699)
chr6 (9-100)||(11014514-11014605)
chr6 (9-75)||(33277348-33277414)
chr6 (6-101)||(16125712-16125807)
chr6 (48-100)||(22748820-22748872)
chr6 (49-89)||(24194981-24195021)
chr6 (47-91)||(24197709-24197753)
[»] chr4 (25 HSPs)
chr4 (9-100)||(50544273-50544364)
chr4 (1-100)||(11789876-11789975)
chr4 (1-100)||(5465870-5465969)
chr4 (47-100)||(42475893-42475946)
chr4 (47-100)||(54316060-54316113)
chr4 (6-90)||(11790052-11790136)
chr4 (4-100)||(17914936-17915032)
chr4 (8-100)||(46993084-46993176)
chr4 (1-100)||(24673906-24674005)
chr4 (10-100)||(7061989-7062079)
chr4 (1-100)||(23655252-23655352)
chr4 (6-101)||(1025096-1025191)
chr4 (47-100)||(21785929-21785982)
chr4 (9-86)||(23655098-23655175)
chr4 (1-89)||(19037750-19037838)
chr4 (47-89)||(5466080-5466122)
chr4 (9-100)||(9551418-9551509)
chr4 (49-90)||(8538360-8538401)
chr4 (1-67)||(9551274-9551340)
chr4 (6-75)||(17914755-17914824)
chr4 (50-100)||(3556383-3556433)
chr4 (1-75)||(3556549-3556624)
chr4 (47-85)||(19037951-19037989)
chr4 (47-101)||(32591177-32591231)
chr4 (47-75)||(26297356-26297384)
[»] chr1 (23 HSPs)
chr1 (9-100)||(24883161-24883252)
chr1 (6-100)||(49777013-49777107)
chr1 (1-100)||(27171816-27171915)
chr1 (1-100)||(3385496-3385595)
chr1 (1-100)||(33156640-33156738)
chr1 (6-100)||(34970002-34970096)
chr1 (1-92)||(37948813-37948904)
chr1 (1-75)||(13946964-13947038)
chr1 (47-100)||(24882988-24883041)
chr1 (1-87)||(34970170-34970256)
chr1 (1-75)||(43297036-43297110)
chr1 (11-100)||(49776836-49776925)
chr1 (1-100)||(33401042-33401140)
chr1 (1-92)||(38338852-38338943)
chr1 (47-100)||(3385325-3385378)
chr1 (47-100)||(33400872-33400925)
chr1 (47-100)||(34622556-34622609)
chr1 (51-89)||(5772120-5772158)
chr1 (52-98)||(33156474-33156520)
chr1 (1-35)||(42082895-42082929)
chr1 (11-100)||(5771925-5772014)
chr1 (6-75)||(27171989-27172058)
chr1 (1-33)||(39781148-39781180)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 41403944 - 41404357
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnn-gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaa 99  Q
    ||||||||||||| |||||||||| ||||||||||||||        | |||||||||||||||||||||||||||||||||||| || |||| ||||||    
T  41403944 aatatttgtttttaaatttaaaatctcaaccgttaaatattttgtttgtcacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaa 41404043  T
Q  100 t-------------actcctgtttttctacatattctcccaacacgaaattgcattccatctttctttgctccttctacacttctaaacattcgatcctc 186  Q
    |             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  41404044 tggagcatacccaaactcctgtttttctacatattctcccaacacgaaattgcattccatctttctctgctccttctacacttctaaacattcaatcctc 41404143  T
Q  187 ctcctcatccctcttttaattttcctattcacacctccttcctaaaattaaatatcaacacttgactactgatcttcaaaactttggactcaagtgaaaa 286  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41404144 ctcctcatccctctcttaattttccttttcacacctccttcctaaaattaaatatcaacacttgactactgatcttcaaaactttggactcaagtgaaaa 41404243  T
Q  287 tgaaggtgagatttcttgctctaatttaaaggtcactttcctaagcaatcacgcctctttcttcctcttaatttcctgtttgtttcatatcaattctaat 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41404244 tgaaggtgagatttcttgctctaatttaaaggtcactttcctaagcaatcacgcctctttcttcctcttaatttcctgtttgtttcatatcaattctaat 41404343  T
Q  387 aaacatggtcattc 400  Q
    ||||||||||||||    
T  41404344 aaacatggtcattc 41404357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 14999287 - 14999188
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| |||||  ||| |||       ||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  14999287 aatatttgttttttaatttaaaatctcaactattagatactttattgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaat 14999188  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 43801656 - 43801755
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||| ||||||||||||||||||||||| |||| |||       ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  43801656 aatattagttttttaatttaaaatttcaactgttagatatttttttgccacatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaat 43801755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 6911140 - 6911046
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||| ||||| |||       |||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  6911140 ttgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaat 6911046  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6911214 - 6911301
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggag 88  Q
    |||||||||||||||||||||||| |||||||||  |||       ||||||||||||||||||||||||||||| ||||||||||||    
T  6911214 aatatttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggag 6911301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 16324955 - 16324861
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||       | ||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  16324955 ttgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaat 16324861  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 22781238 - 22781325
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagc 89  Q
    |||||||||||||||||||||||| ||||||||||||||       | ||||| ||||||||||||||||||||| |||||||||||||    
T  22781238 aatatttgttttttaatttaaaatctcaaccgttaaata-ttttttgtcacatatcttgcatccaaaccctaaattgagtaaatggagc 22781325  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 22781166 - 22781071
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 101  Q
    ||||||||||||||||||| ||||| |||| |||       |||||||| |||||||||||||||| ||| ||||||||| || ||||||||||||    
T  22781166 ttgttttttaatttaaaatctcaactgttagatatctttttgccacatgccttgcatccaaaccctgaatggagtaaatgaagtttagcctaaata 22781071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41722012 - 41722111
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||| ||||||||| | |||||||| |||       || ||||||||||||||||| | ||||||| ||||||| |||||||||||||||    
T  41722012 aatatttgtttttttatttaaaatcttaaccgttagatatttttttgcaacatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaat 41722111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 8489484 - 8489390
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||| ||||| |||       |||||||||||| |||||||||||||||| || |||||| |||||| |||||||    
T  8489484 ttgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaat 8489390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 15009089 - 15009142
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  15009089 gccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaat 15009142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16325029 - 16325118
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngcca--catgtcttgcatccaaaccctaaatagagtaaatggag 88  Q
    |||||||||||||||||||||||| |||||||||| |||        |||  ||||||||||||||||||||||||| ||||||||||||    
T  16325029 aatatttgttttttaatttaaaatctcaaccgttagatatttttttaccatacatgtcttgcatccaaaccctaaatggagtaaatggag 16325118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 43801540 - 43801487
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||| ||||||||| |||||| ||||||||| || |||||||||||    
T  43801540 gccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaat 43801487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 40621712 - 40621797
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatgg 86  Q
    |||||||||||||||||||||||| |||||||||| |||        |||||||| || ||| ||||||||||||  |||||||||    
T  40621712 aatatttgttttttaatttaaaatctcaaccgttagatatttttttaccacatgttttacattcaaaccctaaatgaagtaaatgg 40621797  T

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Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22563326 - 22563227
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22563326 aatatttgttttttaatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 22563227  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 21265747 - 21265847
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| |||||| ||| |||       |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21265747 aatatttgttttttaatttaaaatctcaaccattagatacttttttgccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaat 21265846  T
Q  101 a 101  Q
    |    
T  21265847 a 21265847  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 12232673 - 12232580
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||       |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12232673 ttgttttttaatttaaaatctcaaccgttagatatttttt-gccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaat 12232580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 22563400 - 22563494
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||       ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  22563400 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaat 22563494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 29892989 - 29893081
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||       | |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29892989 ttgttttttaatttaaaatctcaaccgttagatattttt--gtcacatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaat 29893081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 4371524 - 4371471
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4371524 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 4371471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 21265673 - 21265580
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||       ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  21265673 ttgttttttaatttaaaatctcaaccgttagatatttttt-gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaat 21265580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 17200189 - 17200095
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||| ||| |||       |||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||    
T  17200189 ttgttttttaatttaaaatctcaaccattagatatttatttgccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaat 17200095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 34645736 - 34645830
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||       |||||||||||| |||||||||||||||| || ||||||||| | |||||||||    
T  34645736 ttgttttttaatttaaaatctcaaccgttagatattttcttgccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaat 34645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 20296606 - 20296701
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 101  Q
    ||||||||||||||||||| |||||||||  |||       |||||||||||| |||||||  | ||||| |||||||||||||||||||||||||    
T  20296606 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaata 20296701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 34645662 - 34645563
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| |||| ||||| |||       ||||||||||||||||||| ||||||||| |||||||| || |||| |||||||    
T  34645662 aatatttgttttttaatttaaaatctcaatcgttagatatttttt-gccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaat 34645564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 157063 - 156971
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagc 94  Q
    ||||||||||||||||||| |||| |||||||||| |||       |||| ||||||| |||||||| ||||||| ||||||||||||||||||    
T  157063 aatatttgttttttaatttcaaatctcaaccgttagatatttttctgcca-atgtcttacatccaaatcctaaatggagtaaatggagcttagc 156971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 17200263 - 17200356
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagc 94  Q
    ||||| |||||| ||||||||||| |||| ||||| |||       |||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  17200263 aatatctgttttataatttaaaatatcaatcgttagatatttttttgccacatgtcttacatccaaaccttaaatggagtaaatggagcttagc 17200356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 33491417 - 33491452
Alignment:
Q  65 aaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||||||||||||||||||||    
T  33491417 aaaccctaaatagagtaaatggagcttagcctaaat 33491452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20296378 - 20296279
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||| | ||||||||||||||| | |||||||  |||       |||| ||||||| ||||||||||||||||  |||||||||| ||||||| ||||    
T  20296378 aatattcggtttttaatttaaaatcttaaccgttggatacttttttgccatatgtctttcatccaaaccctaaatgaagtaaatggatcttagccaaaat 20296279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 4371554 - 4371582
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaat 75  Q
    |||||||||||||||||||||||||||||    
T  4371554 gccacatgtcttgcatccaaaccctaaat 4371582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 4682825 - 4682781
Alignment:
Q  48 ccacatgtcttgcatccaaaccctaaatagagtaaatggagctta 92  Q
    |||||||||||||||| |||| |||||| ||||||||| ||||||    
T  4682825 ccacatgtcttgcatctaaactctaaatggagtaaatgaagctta 4682781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 33491390 - 33491362
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaat 75  Q
    |||||||||||||||||||||||||||||    
T  33491390 gccacatgtcttgcatccaaaccctaaat 33491362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14076854 - 14076953
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  14076854 aatatttgttttttaatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaat 14076953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 36955480 - 36955578
Alignment:
Q  2 atatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||  ||||||||| |||       ||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  36955480 atatttgttttttaatttaaaatcgcaaccgttagatatttttttgccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaat 36955578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 8754769 - 8754675
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||||||||| ||        |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  8754769 ttgttttttaatttaaaatttcaaccgttagatctttttttgccacatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaat 8754675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 17370178 - 17370084
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||       ||||||||||||||||||||||||||||| |||||||||||| ||||| |||||    
T  17370178 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaat 17370084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 31194155 - 31194249
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||  |||       ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  31194155 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaat 31194249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 31194081 - 31193982
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||  ||||||||||||||| |||||||||  |||       ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  31194081 aatatttagtttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaat 31193982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 36955371 - 36955320
Alignment:
Q  49 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaat 36955320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 42546465 - 42546385
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagta 81  Q
    |||||||||||||||||||||||| |||||||||| |||       |||| |||||||||||||||||||||||| |||||    
T  42546465 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgccaaatgtcttgcatccaaaccctaaatggagta 42546385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 42546539 - 42546620
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatgga 87  Q
    ||||||||||||||||||| |||||||||| ||        | ||||||||||||||||||||||||||| |||||||||||    
T  42546539 ttgttttttaatttaaaatctcaaccgttagatgtttttttgtcacatgtcttgcatccaaaccctaaatggagtaaatgga 42546620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 39634993 - 39635087
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 101  Q
    ||||||||||||||||||| |||||||||| |||       ||| ||| |||| |||||||||||||||| ||||| ||| |||||||||||||||    
T  39634993 ttgttttttaatttaaaatctcaaccgttacatatttttttgccgcatatcttacatccaaaccctaaat-gagtatatgaagcttagcctaaata 39635087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 39634919 - 39634827
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcc 95  Q
    |||||||||||||||||||||||| |||||||||| ||        |||||||||||| |||||||||||| |||  ||||||||||||||||||    
T  39634919 aatatttgttttttaatttaaaatctcaaccgttagat-tttttttgccacatgtcttacatccaaaccct-aatgaagtaaatggagcttagcc 39634827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 32347130 - 32347181
Alignment:
Q  49 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||| |||||||||| ||||| |||||| |||||||||||||||||    
T  32347130 cacatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaat 32347181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 43449537 - 43449493
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagctt 91  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||    
T  43449537 gccacatgtcttgcatccaaagcctaaatagactaaattgagctt 43449493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 9862223 - 9862276
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||| ||||||||||||||||||||| ||||||| | | |||| |||||||    
T  9862223 gccacatatcttgcatccaaaccctaaatggagtaaacgaaacttaccctaaat 9862276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32347013 - 32346981
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  32347013 aatatttgttttttaatttaaaatctcaaccgt 32346981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4041368 - 4041467
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| |||||||||| |||       ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  4041368 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaat 4041467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 46883597 - 46883685
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagc 89  Q
    |||||||||||||||||||||||| |||||||||| |||       ||||||||||||||||||||||||||||| |||||||||||||    
T  46883597 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagc 46883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 53197104 - 53197005
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| |||||||||| |||       ||||||||| ||||||||||||||||||||||||||||| || ||||| |||||    
T  53197104 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaat 53197005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 43797463 - 43797369
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||  |||       ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  43797463 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaat 43797369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 8799501 - 8799589
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagc 89  Q
    |||||||||||||||||||||||| |||||||||| |||       ||||||||||||||||| ||||||||||| |||||||||||||    
T  8799501 aatatttgttttttaatttaaaatctcaaccgttatatatttttttgccacatgtcttgcatctaaaccctaaatggagtaaatggagc 8799589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 8799425 - 8799334
Alignment:
Q  9 ttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||| ||||| |||| |||       ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  8799425 ttttttaatttaaaatctcaactgttagatatatttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaat 8799334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 29828866 - 29828966
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| |||||||||| |||       ||||||| |||| |||||||| ||||||| || ||||||||||||||| |||||    
T  29828866 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatatcttacatccaaatcctaaatggaataaatggagcttagcttaaat 29828965  T
Q  101 a 101  Q
    |    
T  29828966 a 29828966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 38499934 - 38499836
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||| |||||| |||||||| |||||||||| ||        ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  38499934 aatatttggtttttagtttaaaatctcaaccgttagat-tttttttgccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaat 38499836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 43797537 - 43797636
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||| ||||||||||||||| | |||||||  |||       | |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  43797537 aatatttggtttttaatttaaaatcttaaccgttggatacttttttgtcacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaat 43797636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 53197214 - 53197267
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  53197214 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaat 53197267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 25349895 - 25349986
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagctta 92  Q
    ||||||| |||||||||||||||| |||||||||| ||        | |||||||||| ||||||||||||||||||| |||||||||||||    
T  25349895 aatatttattttttaatttaaaatctcaaccgttagatgtttttttggcacatgtcttacatccaaaccctaaatagaataaatggagctta 25349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 38500011 - 38500105
Alignment:
Q  5 tttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||| ||||| |||| |||        ||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  38500011 tttgttttttaatttaaaatctcaactgttagatattttttt-ccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaat 38500105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 46883526 - 46883452
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagt 80  Q
    ||||||||||||||||||| |||||||||| |||       |||||||||||| |||||||||||||||| ||||    
T  46883526 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaaccctaaatggagt 46883452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 8657469 - 8657427
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagc 89  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  8657469 gccacatgtcttgcattcaaaccctaaatggagtaaatggagc 8657427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43797759 - 43797680
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagt 80  Q
    ||||||| ||||||||||||||||||||||| ||| |||       |||||||||||| |||||||||| ||||| ||||    
T  43797759 aatatttattttttaatttaaaatttcaaccattagatatttttttgccacatgtcttacatccaaaccttaaatggagt 43797680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 29828788 - 29828755
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaata 39  Q
    ||||||||||||||||||| ||||||||||||||    
T  29828788 ttgttttttaatttaaaatctcaaccgttaaata 29828755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 34937485 - 34937444
Alignment:
Q  47 gccacatgtcttgcatcca-aaccctaaatagagtaaatgga 87  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  34937485 gccacatgtcttgcatccataaccctaaatagactaaatgga 34937444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 43797872 - 43797909
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaat 84  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  43797872 gccacatgtcttgcatccaagccctaaatggagtaaat 43797909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 35207289 - 35207195
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35207289 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 35207195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 48006309 - 48006397
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagc 89  Q
    ||||||| |||||||||||||||| ||||||||||||||       ||||||||| ||||||||||| |||||||||||||||||||||    
T  48006309 aatatttattttttaatttaaaatctcaaccgttaaatatttttttgccacatgttttgcatccaaatcctaaatagagtaaatggagc 48006397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19318332 - 19318432
Alignment:
Q  1 aatatttgtttt-ttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaa 99  Q
    |||||||||||| |||||||||||| |||||||||| |||       ||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||    
T  19318332 aatatttgttttcttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaa 19318431  T
Q  100 t 100  Q
    |    
T  19318432 t 19318432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 35207363 - 35207459
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| || |||||||  |        ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  35207363 aatatttgttttttaatttaaaatctcgaccgttattt---tttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaat 35207459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6408439 - 6408513
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaat 75  Q
    |||||||||||||||||||||||| |||||||||| |||       |||||||||||||||||||||||||||||    
T  6408439 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaat 6408513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 29474603 - 29474696
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||||||||| |||        | ||||||||||||||||| | ||||||||||||||||||| |||||||||||    
T  29474603 ttgttttttaatttaaaatttcaaccgttagatattttttt-ctacatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaat 29474696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 25048208 - 25048308
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgtta-aatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaa 99  Q
    ||||||| |||||||||||||||| |||||||||  ||||       | ||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  25048208 aatatttattttttaatttaaaatctcaaccgtttgaatatttttttgtcacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaa 25048307  T
Q  100 t 100  Q
    |    
T  25048308 t 25048308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 39983870 - 39983921
Alignment:
Q  49 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaat 39983921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 19318452 - 19318503
Alignment:
Q  49 cacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaat 19318503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 2834392 - 2834483
Alignment:
Q  9 ttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||| ||||| |||| |||       ||||||||| ||| ||||||||||||||| || |||||||| ||||||||||||    
T  2834392 ttttttaatttaaaatctcaactgttacatattattttgccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaat 2834483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 35363426 - 35363335
Alignment:
Q  9 ttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||| |||||||||| ||        ||||||||| ||||||| |||| |||||| ||||||||| | ||||||||||||    
T  35363426 ttttttaatttaaaatctcaaccgttatatttttttttgccacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaat 35363335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26903544 - 26903511
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  26903544 aatatttgttttttaatttaaaatctcaaccgtt 26903511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 28547553 - 28547512
Alignment:
Q  49 cacatgtcttgcatccaaaccctaaatagagtaaatggagct 90  Q
    ||||||||||||||||||| ||||||| || |||||||||||    
T  28547553 cacatgtcttgcatccaaaacctaaattgactaaatggagct 28547512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 39983811 - 39983783
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaat 75  Q
    |||||||||||||||||||||||||||||    
T  39983811 gccacatgtcttgcatccaaaccctaaat 39983783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 16125638 - 16125539
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||  | |||||| || |||||||||||    
T  16125638 aatatttgttttttaatttaaaatttcaatcgttaaatatttttttgccacatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaat 16125539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 22748699 - 22748605
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||  |||       ||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||    
T  22748699 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaat 22748605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 11014514 - 11014605
Alignment:
Q  9 ttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||||||||||       | ||||| |||||||| |||||  |||||||| ||||||||| |||||||||||    
T  11014514 ttttttaatttaaaatttcaaccgttaaatatttttttgtcacatatcttgcattcaaacattaaatagaataaatggagtttagcctaaat 11014605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 33277414 - 33277348
Alignment:
Q  9 ttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaat 75  Q
    |||||||||||||||| |||||| |||||||       |||||||||||||||||||||||||||||    
T  33277414 ttttttaatttaaaatctcaaccattaaatatttttttgccacatgtcttgcatccaaaccctaaat 33277348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 16125712 - 16125807
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 101  Q
    ||||||||||||||||||| ||| | |||| |||       | ||||| |||||||||||| | |||||| ||||||||||||||||| |||||||    
T  16125712 ttgttttttaatttaaaatctcatctgttagatattattttgtcacatatcttgcatccaagctctaaattgagtaaatggagcttagtctaaata 16125807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 22748820 - 22748872
Alignment:
Q  48 ccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||    
T  22748820 ccacatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaat 22748872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 24195021 - 24194981
Alignment:
Q  49 cacatgtcttgcatccaaaccctaaatagagtaaatggagc 89  Q
    ||||||||||||||||||| ||||||| || ||||||||||    
T  24195021 cacatgtcttgcatccaaagcctaaatggactaaatggagc 24194981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 24197753 - 24197709
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagctt 91  Q
    |||||||||||||||||||||  ||||||||| ||||| ||||||    
T  24197753 gccacatgtcttgcatccaaagtctaaatagactaaattgagctt 24197709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 50544364 - 50544273
Alignment:
Q  9 ttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||| ||| |||||| |||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50544364 ttttttaatttaaaatctcatccgttagatatctttttgccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaat 50544273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11789975 - 11789876
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| ||||||||| ||||       ||||||| ||||||||| ||||||||||| ||||||||| ||||| ||||||||    
T  11789975 aatatttgttttttaatttaaaatctcaaccgttgaatatttttttgccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaat 11789876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5465969 - 5465870
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| |||||||||| |||       |||||||||||| |||| |||||||||||  |||||||| | ||||||||||||    
T  5465969 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaat 5465870  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 42475946 - 42475893
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42475946 gccacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaat 42475893  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 54316060 - 54316113
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  54316060 gccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaat 54316113  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 11790052 - 11790136
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagct 90  Q
    ||||||||||||||||||| |||||||||| |||       |||||||||||||||||||||||||||||  | |||||||||||    
T  11790052 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatgaaataaatggagct 11790136  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 17914936 - 17915032
Alignment:
Q  4 atttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||| |||||||||||||||| |||||||||  |||       ||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  17914936 attttttttttaatttaaaatatcaaccgttggatatttttttgccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaat 17915032  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 46993176 - 46993084
Alignment:
Q  8 gttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||| || |||||||||| |||       || |||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  46993176 gttttttaatttaacatctcaaccgttagatatttttttgctacatatcttgcatccaaaccctaaatagaataaatggagcttaacctaaat 46993084  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 24673906 - 24674005
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| |||| ||||| |||       | || ||||||| ||||||||| |||||||||||||||| || |||||||||||    
T  24673906 aatatttgttttttaatttaaaatctcaatcgttagatatttttttgtcatatgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaat 24674005  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 7062079 - 7061989
Alignment:
Q  10 tttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||| ||||| |||||||||| |||       ||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||    
T  7062079 tttttaattaaaaatctcaaccgttatatatttttttgccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaat 7061989  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 23655252 - 23655352
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnn-gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaa 99  Q
    |||||||| |||||||||||||||||||||||||| ||         ||||||||||||||||| ||||||||||| || |||||| |||||| ||||||    
T  23655252 aatatttgatttttaatttaaaatttcaaccgttagattttctttttgccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaa 23655351  T
Q  100 t 100  Q
    |    
T  23655352 t 23655352  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 1025096 - 1025191
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 101  Q
    ||||||||||||||||||| |||||||||| |||         ||||| |||||||||||||| |||||| ||||||||| ||||||||| |||||    
T  1025096 ttgttttttaatttaaaatctcaaccgttatatatttttttatcacatatcttgcatccaaactctaaattgagtaaatgaagcttagccaaaata 1025191  T

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Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 21785929 - 21785982
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||  ||||||||||| |||||| ||||||||||||||||||||||||    
T  21785929 gccacatgtaatgcatccaaactctaaatggagtaaatggagcttagcctaaat 21785982  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 23655175 - 23655098
Alignment:
Q  9 ttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatgg 86  Q
    ||||||||||||||||||||||||||| |||       ||| |||||||||||||||| || ||||| ||||||||||    
T  23655175 ttttttaatttaaaatttcaaccgttagatatttttttgccgcatgtcttgcatccaagccataaattgagtaaatgg 23655098  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 19037838 - 19037750
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagc 89  Q
    |||||||||||||||||||||||| |||||||||| ||        | | ||||||||||||||||| | ||||| |||||||||||||    
T  19037838 aatatttgttttttaatttaaaatctcaaccgttagatttttttttgtcgcatgtcttgcatccaaatcttaaatggagtaaatggagc 19037750  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 5466080 - 5466122
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagc 89  Q
    |||||||||||| ||||||||||||||||||||||||| ||||    
T  5466080 gccacatgtcttacatccaaaccctaaatagagtaaatagagc 5466122  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 9551418 - 9551509
Alignment:
Q  9 ttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||| |||||||| | |||       |||| ||||||| ||||||| |||||||| |||||||||||| |||| ||||||    
T  9551418 ttttttaatttaaaatctcaaccgtgagatatttttttgccaaatgtcttccatccaagccctaaatggagtaaatggagtttagtctaaat 9551509  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 8538360 - 8538401
Alignment:
Q  49 cacatgtcttgcatccaaaccctaaatagagtaaatggagct 90  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  8538360 cacatgtcttgcatccaaaccctaaatggactaaatggagct 8538401  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9551340 - 9551274
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaa 67  Q
    |||||||||||||||||||||||| |||||||||| |||       | |||||||||||||||||||    
T  9551340 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgacacatgtcttgcatccaaa 9551274  T

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Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 17914824 - 17914755
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaat 75  Q
    ||||||||||||||||||| ||||| |||  |||       |||||||||||||||||||||||||||||    
T  17914824 ttgttttttaatttaaaatctcaactgttggatatttttttgccacatgtcttgcatccaaaccctaaat 17914755  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 3556433 - 3556383
Alignment:
Q  50 acatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||| ||||| ||||||||| || ||||| |||||    
T  3556433 acatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaat 3556383  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3556549 - 3556624
Alignment:
Q  1 aatatttgtttttta-atttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaat 75  Q
    ||||||||||||||  | ||||||| |||||||||| |||       |||||||||||||||||||||||||||||    
T  3556549 aatatttgttttttctaattaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaat 3556624  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 19037951 - 19037989
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatg 85  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  19037951 gccacatgtcttgcatccaaatcctaaatggagtaaatg 19037989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 32591231 - 32591177
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaata 101  Q
    ||||||| | |||||| |||||| ||||| |||||||||||||||| ||||||||    
T  32591231 gccacatattttgcatacaaaccttaaatggagtaaatggagcttaacctaaata 32591177  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 26297384 - 26297356
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaat 75  Q
    |||||||||||||||||||||||||||||    
T  26297384 gccacatgtcttgcatccaaaccctaaat 26297356  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 24883161 - 24883252
Alignment:
Q  9 ttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||| |||||||||| |||       ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  24883161 ttttttaatttaaaatctcaaccgttagatatttttttgccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaat 24883252  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 49777013 - 49777107
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||       | |||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  49777013 ttgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaat 49777107  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27171915 - 27171816
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| || ||||||| |||       |||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||    
T  27171915 aatatttgttttttaatttaaaatctcgaccgttagatatttttttgccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaat 27171816  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3385496 - 3385595
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||| |||||||||||||||| |||||||||| |||        |||||| |||| |||||||||||||||| ||||||||||||||| ||||||||    
T  3385496 aatatttattttttaatttaaaatctcaaccgttagatatttttttaccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaat 3385595  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 33156640 - 33156738
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||||||||||| |||||||||| ||        ||||||||||||| ||||||||||||||| ||||||||  ||||||||||||||    
T  33156640 aatatttgttttttaatttaaaatctcaaccgttagat-tttttttgccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaat 33156738  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 34970096 - 34970002
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||||||||||||||| |||||||||| |||        |||||||||||||||||||| ||||||| |||||||||||| ||| |||||||    
T  34970096 ttgttttttaatttaaaatctcaaccgttagatatttttttaccacatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaat 34970002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 37948904 - 37948813
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagctta 92  Q
    |||||||||||||||||||||||| |||||||||| |||       || ||||||||| |||||||||| ||||| ||||||||| ||||||    
T  37948904 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgcaacatgtcttacatccaaaccttaaattgagtaaatgaagctta 37948813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13947038 - 13946964
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaat 75  Q
    |||||||||||||||||||||||| |||||||||| |||       |||||||||||| ||||||||||||||||    
T  13947038 aatatttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaaccctaaat 13946964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 24883041 - 24882988
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  24883041 gccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaat 24882988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 34970170 - 34970256
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatgga 87  Q
    ||||||| |||||||||||||||| | |||||||| |||       |||||||||||| |||||||||| |||||| ||||||||||    
T  34970170 aatatttattttttaatttaaaatcttaaccgttagatatttttttgccacatgtcttacatccaaaccttaaataaagtaaatgga 34970256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43297036 - 43297110
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaat 75  Q
    |||||||||||||||||||||||| |||||||||| |||       | ||||||||||||||||||| |||||||    
T  43297036 aatatttgttttttaatttaaaatctcaaccgttagatatttttttggcacatgtcttgcatccaaatcctaaat 43297110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 49776925 - 49776836
Alignment:
Q  11 ttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||| ||||||||| ||||        |||||||||||||||||||| ||||||| ||||||||  |||||||| |||||    
T  49776925 ttttaatttaaaatctcaaccgttcaatatttttttaccacatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaat 49776836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 33401042 - 33401140
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    ||||||| |||||||||||||||| | ||||||||| |        |||||||||||| |||| ||||| |||||| ||||||| |||||||||||||||    
T  33401042 aatatttattttttaatttaaaatcttaaccgttaatt-tttttttgccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaat 33401140  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 38338852 - 38338943
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagctta 92  Q
    ||||||| |||||||||||||||||||||| |||| |||       |||||||||||| ||||||||||  |||| || ||||| |||||||    
T  38338852 aatatttattttttaatttaaaatttcaactgttagatatttttttgccacatgtcttacatccaaacctcaaatggaataaatagagctta 38338943  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 3385378 - 3385325
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||| |||||||||||||||| | ||||| | ||||||||||||||    
T  3385378 gccacatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaat 3385325  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 33400925 - 33400872
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||| ||| |||||||||| ||||| |||||||||||||||||| |||||    
T  33400925 gccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaat 33400872  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 34622556 - 34622609
Alignment:
Q  47 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||||| |||||| ||||| |||||| |||||||||| ||||||    
T  34622556 gccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaat 34622609  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 5772120 - 5772158
Alignment:
Q  51 catgtcttgcatccaaaccctaaatagagtaaatggagc 89  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  5772120 catgtcttgcatccaaaccttaaatagagtagatggagc 5772158  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 33156520 - 33156474
Alignment:
Q  52 atgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaa 98  Q
    ||||||| ||||||||| |||||| ||||||||||||| ||||||||    
T  33156520 atgtcttacatccaaactctaaatggagtaaatggagcctagcctaa 33156474  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42082929 - 42082895
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgtta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  42082929 aatatttgttttttaatttaaaatctcaaccgtta 42082895  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 5772014 - 5771925
Alignment:
Q  11 ttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcctaaat 100  Q
    |||||||||||||| |||||||||| |||       |||| || |||| ||| ||||| |||||| ||||||||| ||||||| ||||||    
T  5772014 ttttaatttaaaatctcaaccgttagatatttttttgccatatatcttacattcaaactctaaatggagtaaatgaagcttagtctaaat 5771925  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 27171989 - 27172058
Alignment:
Q  6 ttgttttttaatttaaaatttcaaccgttaaatannnnnnngccacatgtcttgcatccaaaccctaaat 75  Q
    ||||||||||||| ||||| |||||||||| |||       |||||||||||| |||||||||| |||||    
T  27171989 ttgttttttaattgaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaaccttaaat 27172058  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39781180 - 39781148
Alignment:
Q  1 aatatttgttttttaatttaaaatttcaaccgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  39781180 aatatttgttttttaatttaaaatctcaaccgt 39781148  T

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