View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5388-Insertion-10 (Length: 358)

Name: NF5388-Insertion-10
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5388-Insertion-10
NF5388-Insertion-10
[»] chr2 (14 HSPs)
chr2 (25-196)||(5573233-5573404)
chr2 (21-166)||(5576309-5576456)
chr2 (21-149)||(5586730-5586858)
chr2 (25-144)||(5592970-5593089)
chr2 (21-149)||(5582479-5582606)
chr2 (23-147)||(12059434-12059558)
chr2 (21-132)||(12052030-12052141)
chr2 (53-132)||(12064819-12064898)
chr2 (204-266)||(5587107-5587169)
chr2 (204-266)||(5573576-5573638)
chr2 (26-116)||(5558818-5558908)
chr2 (52-114)||(5568505-5568567)
chr2 (211-268)||(5582858-5582915)
chr2 (211-268)||(5593350-5593407)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 5573233 - 5573404
Alignment:
Q  25 tgtctcaatacgaattacagctccgccagatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaa 124  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||| | ||||||     
T  5573233 tgtctccatacgaattccagctccgccagatgcatagttcacacctttgagtatgtctgaaccactgatgtttgcaaatggtggaatgaaattctcaaat 5573332  T
Q  125 ccaagaagctgagctgcaatcaaaaggacttcagtttgagcttaactaaaaagagggattaaatttcataat 196  Q
    |||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||||    
T  5573333 ccaagaagttgagctgcaatcaaaaggacttgagtttgagcttaattaaaaagagagattaaatttgataat 5573404  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 5576309 - 5576456
Alignment:
Q  21 tgcttgtctcaatacgaattacagctccgccagatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaattcctc 120  Q
    |||||||||| ||||||||| ||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||    
T  5576309 tgcttgtctcgatacgaattccagctgcaccagatgcatagttaacacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctc 5576408  T
Q  121 aaaaccaagaagctgagctgcaatcaaaaggactt--cagtttgagct 166  Q
    |||||||||||||||||||||||| ||||| ||||  |||||||||||    
T  5576409 aaaaccaagaagctgagctgcaataaaaagaactttacagtttgagct 5576456  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 5586730 - 5586858
Alignment:
Q  21 tgcttgtctcaatacgaattacagctccgccagatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaattcctc 120  Q
    ||||||||||  |||||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  5586730 tgcttgtctcggtacgaattccagctgcgccagatgcgtagttcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaagttctc 5586829  T
Q  121 aaaaccaagaagctgagctgcaatcaaaa 149  Q
    ||| ||||||||||||||| |||||||||    
T  5586830 aaagccaagaagctgagctacaatcaaaa 5586858  T

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Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 5592970 - 5593089
Alignment:
Q  25 tgtctcaatacgaattacagctccgccagatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaa 124  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  5592970 tgtctccatacgaattccagctccgccagatgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaa 5593069  T
Q  125 ccaagaagctgagctgcaat 144  Q
    ||||| | ||||||||||||    
T  5593070 ccaagtaactgagctgcaat 5593089  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 5582479 - 5582606
Alignment:
Q  21 tgcttgtctcaatacgaattacagctccgccagatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaattcctc 120  Q
    |||||||||| | ||||||| ||||||| | ||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||| ||||||| | |||    
T  5582479 tgcttgtctcgacacgaattccagctccacgagatgcatagttcacaccttagagtatgtctgaaccactaatgtttgcaaatggtagaatgaagttctc 5582578  T
Q  121 aaaaccaagaagctgagctgcaatcaaaa 149  Q
    |||| ||||||||||||||||||| ||||    
T  5582579 aaaa-caagaagctgagctgcaataaaaa 5582606  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 12059558 - 12059434
Alignment:
Q  23 cttgtctcaatacgaattacagctccgccagatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaa 122  Q
    |||||||| |||| |||| | |||||  | |||||||| |||||| || ||||||||||||| |||||| |||||||||||| ||||||||||| || ||    
T  12059558 cttgtctcgatacaaattcctgctccctctgatgcatagttcacatctctgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaa 12059459  T
Q  123 aaccaagaagctgagctgcaatcaa 147  Q
    | |||| ||| ||||||||||||||    
T  12059458 atccaacaaggtgagctgcaatcaa 12059434  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 12052141 - 12052030
Alignment:
Q  21 tgcttgtctcaatacgaattacagctccgccagatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaattcctc 120  Q
    |||||||||| ||||||||| | |||||  || |||||||||||||||||||||| || ||| | |||||| |||||||||||| ||||||||||  ||     
T  12052141 tgcttgtctcgatacgaattcctgctccctcatatgcataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatcta 12052042  T
Q  121 aaaaccaagaag 132  Q
    ||| ||||||||    
T  12052041 aaatccaagaag 12052030  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 12064898 - 12064819
Alignment:
Q  53 gatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaaccaagaag 132  Q
    |||||||| |||||| |||||||||||||||| |||||| |||||||||||| ||||||||||| || ||| ||||||||    
T  12064898 gatgcatatttcacatctttgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatccaagaag 12064819  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 5587107 - 5587169
Alignment:
Q  204 taaatacacaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaaga 266  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||    
T  5587107 taaatagacaaggcacttgggatttcccattgacacattgttgcaaatagtttgcagaaaaga 5587169  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 5573576 - 5573638
Alignment:
Q  204 taaatacacaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaaga 266  Q
    |||||||||||||||| || ||||||||||||||||||||||  ||||| ||| |||||||||    
T  5573576 taaatacacaaggcacttgagatttcccattgacacattgtttaaaatagtttgcagacaaga 5573638  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 5558818 - 5558908
Alignment:
Q  26 gtctcaatacgaattacagctccgccagatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaatt 116  Q
    |||||| | |||||| ||||| | ||||||||||| || |||||||| ||||| ||||| ||| || |||||||||| ||||| |||||||    
T  5558818 gtctcattgcgaattccagctgcaccagatgcatagttaacacctttaagtatatctgaaccaatagtgtttgcaaagggtgggatgaatt 5558908  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 5568505 - 5568567
Alignment:
Q  52 agatgcataattcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaa 114  Q
    ||||||||| || |||||||| |||||| |||||||| || |||||||||||||||| |||||    
T  5568505 agatgcatagttaacacctttaagtatgcctgagccaatattgtttgcaaatggtgggatgaa 5568567  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 5582858 - 5582915
Alignment:
Q  211 acaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaagaga 268  Q
    |||||| || |||||||||||||||||| |||| |||||||| ||| |||||||||||    
T  5582858 acaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagaga 5582915  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 5593350 - 5593407
Alignment:
Q  211 acaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaagaga 268  Q
    |||||| || |||||||||||||||||| |||| |||||||| ||| |||||||||||    
T  5593350 acaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagaga 5593407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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