View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5388-Insertion-11 (Length: 316)
Name: NF5388-Insertion-11
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388-Insertion-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 45128926 - 45129235
Alignment:
| Q |
7 |
agtttctttactcaccaatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtg |
106 |
Q |
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| T |
45128926 |
agtttctttactcaccaatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtg |
45129025 |
T |
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| Q |
107 |
aacatgttgtaagttgcatctggtattagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaact |
206 |
Q |
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| T |
45129026 |
aacatgttgtaagttgcatctgatattagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaact |
45129125 |
T |
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| Q |
207 |
gcaattcaactttggtatcaacagctagcaaattgtatggaatnnnnnnnntcatcaatgtagcattacttaccgctatgcctttaaggttgaatatctt |
306 |
Q |
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| T |
45129126 |
gcaattcaactttggtatcaacagctagcaaattgtatggaataaaaaaaatcatcaatgtagccttacttacggctatgcctttaaggttgaatatctt |
45129225 |
T |
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| Q |
307 |
gtttcttttg |
316 |
Q |
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| T |
45129226 |
gtttcttttg |
45129235 |
T |
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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 40280806 - 40280985
Alignment:
| Q |
32 |
acctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctggta |
131 |
Q |
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| T |
40280806 |
acctttgaacaaagcagggaaatggagtttctatagtactcacttacatactgcgaataattgcagcctgcggtgaacattttgtaagttgaatctgata |
40280905 |
T |
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| Q |
132 |
ttagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaat |
211 |
Q |
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| T |
40280906 |
tcaatccatgagaccagaagaactcagcccttgaattgaagtcagtggcatattctagaagtggatttcccaactgcaat |
40280985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 6632284 - 6632346
Alignment:
| Q |
136 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatt |
198 |
Q |
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| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattctaaaactggatt |
6632346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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