View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5388-Insertion-12 (Length: 314)

Name: NF5388-Insertion-12
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5388-Insertion-12
NF5388-Insertion-12
[»] chr4 (7 HSPs)
chr4 (8-314)||(4122935-4123241)
chr4 (8-103)||(4346265-4346360)
chr4 (8-113)||(4362452-4362556)
chr4 (8-113)||(4336802-4336906)
chr4 (143-306)||(4336599-4336751)
chr4 (233-287)||(3746505-3746561)
chr4 (32-101)||(4319617-4319686)
[»] chr7 (2 HSPs)
chr7 (243-305)||(2087329-2087391)
chr7 (227-311)||(36424650-36424734)
[»] chr3 (1 HSPs)
chr3 (199-285)||(9233222-9233308)
[»] chr2 (1 HSPs)
chr2 (245-306)||(31062194-31062255)
[»] chr5 (4 HSPs)
chr5 (224-290)||(7566378-7566446)
chr5 (232-274)||(12045575-12045617)
chr5 (233-300)||(26683695-26683764)
chr5 (227-285)||(10515804-10515864)
[»] chr8 (1 HSPs)
chr8 (212-276)||(10659451-10659515)
[»] chr1 (1 HSPs)
chr1 (227-299)||(31659661-31659732)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 4122935 - 4123241
Alignment:
Q  8 agaataacctttggagttgaaacttaaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaaattctgtaaaaaagtg 107  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  4122935 agaataacctttggagttgaaacttaaccaatttgggtaattatcacaggggagcaaaacactaccacccccgtcgacagtcaaattctgtaaaaaagtg 4123034  T
Q  108 gaaataaatactaatatcacaatcatttaacaatgatataatactcctcataagataattattcgtattttgatcagtaaaaattaaaacaatgatattt 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4123035 gaaataaacactaatatcacaatcatttaacaatgatataatactcctcataagataattattcgtattttgatcagtaaaaattaaaacaatgatattt 4123134  T
Q  208 ggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacatcactcttg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4123135 ggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacatatcaaatctatcacatcactcttg 4123234  T
Q  308 ttatttc 314  Q
    |||||||    
T  4123235 ttatttc 4123241  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 4346360 - 4346265
Alignment:
Q  8 agaataacctttggagttgaaacttaaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaaattctgtaaaaa 103  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4346360 agaataacctttggagttgaaagttgaccaatttgggtaattatcaccggggagcaaaaaactaccacgcccatcgacagtcaaattctgtaaaaa 4346265  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 4362556 - 4362452
Alignment:
Q  8 agaataacctttggagttgaaacttaaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaaattctgtaaaaaagtg 107  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4362556 agaataacctttggcgttgaaacttaaccaatttgggtaatcatcaccagggagcaaaaaactaccacgcccatcgacagtcaaattctgta-aaaagtg 4362458  T
Q  108 gaaata 113  Q
    ||||||    
T  4362457 gaaata 4362452  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 4336906 - 4336802
Alignment:
Q  8 agaataacctttggagttgaaacttaaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaaattctgtaaaaaagtg 107  Q
    |||||||||||| |||||||||  ||||||||||||| ||| ||||| |||||||||||| ||||||| |||||||||||||| ||||||| | ||||||    
T  4336906 agaataacctttcgagttgaaagctaaccaatttgggtaatcatcactggggagcaaaaagctaccacacccatcgacagtcacattctgt-agaaagtg 4336808  T
Q  108 gaaata 113  Q
    ||||||    
T  4336807 gaaata 4336802  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 306
Target Start/End: Complemental strand, 4336751 - 4336599
Alignment:
Q  143 atataatactcctcataagataattattcgtattttgatcagtaaaaattaaaacaatgatatttggacaccccaattttccaaacactcatttaacact 242  Q
    |||||| | |||||| ||||||||||   |||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||| ||||| | | |     
T  4336751 atataacattcctcaaaagataatta---gtattttgataaataaaaattacaacaatgatatttggacaccccaattttcgaaacaatcattcagctcc 4336655  T
Q  243 tcattttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacatcactctt 306  Q
    ||| ||        |||||||||||||||||||| |||| |||||||| |||||| | ||||||    
T  4336654 tcaatt--------tctctcttcctatcacatcatcaacttatcaaatctatcacgttactctt 4336599  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 3746505 - 3746561
Alignment:
Q  233 atttaacacttcattttctctttatctc--tcttcctatcacatcaccaacatatca 287  Q
    ||||||||||||||||||||| ||||||  ||||| ||||| ||||||||| |||||    
T  3746505 atttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatca 3746561  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 4319617 - 4319686
Alignment:
Q  32 taaccaatttgggcaattatcacaggggagcaaaaaactaccacgcccatcgacagtcaaattctgtaaa 101  Q
    ||||||||  ||| |||||||||| |||||  |||||| |||| || |||||| ||||||||||||||||    
T  4319617 taaccaatccgggtaattatcacaagggagtgaaaaacgaccatgctcatcgatagtcaaattctgtaaa 4319686  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 2087329 - 2087391
Alignment:
Q  243 tcattttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacatcactct 305  Q
    |||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||| |||||    
T  2087329 tcattttctctttatctctcttcctatcacattaacaatatatcacatttatcacattactct 2087391  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 36424734 - 36424650
Alignment:
Q  227 acactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacatcactcttgttat 311  Q
    ||||| |||||||| || ||||||||||||| ||||||||||||||| || | ||| |||| ||  | ||||||||| |||||||    
T  36424734 acacttatttaacattttattttctctttatttctcttcctatcacaccaactacacatcatatcaaacacatcacttttgttat 36424650  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 9233222 - 9233308
Alignment:
Q  199 atgatatttggacaccccaattttccaaacactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacatat 285  Q
    |||||||||  |||||| || ||| || ||||||||| ||||||||||||| |||| |||||||||| |||||||||| ||||||||    
T  9233222 atgatattttaacaccctaactttacatacactcattcaacacttcattttatcttcatctctcttcttatcacatcatcaacatat 9233308  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 31062194 - 31062255
Alignment:
Q  245 attttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacatcactctt 306  Q
    ||||||| | |||||||||| ||||||||||||||| |||||| ||||||||||||| ||||    
T  31062194 attttctatgtatctctctttctatcacatcaccaaaatatcatatttatcacatcattctt 31062255  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 7566446 - 7566378
Alignment:
Q  224 caaacactcatttaacacttcattttctcttta--tctctcttcctatcacatcaccaacatatcaaat 290  Q
    |||||| | ||||||||||||||||||||| ||  ||||||||||||||| |||| |||| ||||||||    
T  7566446 caaacatttatttaacacttcattttctctctatctctctcttcctatcatatcatcaacctatcaaat 7566378  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 12045617 - 12045575
Alignment:
Q  232 catttaacacttcattttctctttatctctcttcctatcacat 274  Q
    |||| |||| |||||||||||| ||||||||||||||||||||    
T  12045617 cattcaacaattcattttctctatatctctcttcctatcacat 12045575  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 26683764 - 26683695
Alignment:
Q  233 atttaacacttcattttctctttatctctct--tcctatcacatcaccaacatatcaaatttatcacatc 300  Q
    |||||| |||||||||||||| ||||||| |  |||||||||||||| || |||| | ||||||||||||    
T  26683764 atttaatacttcattttctctatatctctttactcctatcacatcactaatatataagatttatcacatc 26683695  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 10515864 - 10515804
Alignment:
Q  227 acactcatttaacacttcattttctctttatc--tctcttcctatcacatcaccaacatat 285  Q
    |||||| || |||| |||||||||||||||||  |||||||||||||||||| ||| ||||    
T  10515864 acactcgttcaacatttcattttctctttatctatctcttcctatcacatcatcaatatat 10515804  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 10659451 - 10659515
Alignment:
Q  212 accccaattttccaaacactcatttaacacttcattttctctttatctctcttcctatcacatca 276  Q
    ||||||||||||| |||| ||||| ||||| ||||||  ||||||||||| || |||| ||||||    
T  10659451 accccaattttcctaacattcattcaacacatcatttaatctttatctctttttctattacatca 10659515  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 31659661 - 31659732
Alignment:
Q  227 acactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacatatcaaatttatcacat 299  Q
    ||||| ||| ||||||||||||||| | ||||||| ||| ||| | |||||||| |||||| |||||||||||    
T  31659661 acacttattaaacacttcattttctgtatatctct-ttcttattatatcaccaatatatcatatttatcacat 31659732  T

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