View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5388-Insertion-4 (Length: 983)
Name: NF5388-Insertion-4
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388-Insertion-4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 793; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 8 - 975
Target Start/End: Complemental strand, 10121588 - 10120616
Alignment:
| Q |
8 |
aattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagagacttttttgtctga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121588 |
aattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagagacttttttgtctga |
10121489 |
T |
|
| Q |
108 |
cccttcttctgcttcatatccactcatatagtatcttgctcctatcactttcctataatatactatcaatgattaaccaatgaagacggtccaacttgaa |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121488 |
cccttcttctgtttcatatccactcatatagtatcttgctcctatcactttcctataatatactatcaatgattaaccaatgaagacggtccaacttgaa |
10121389 |
T |
|
| Q |
208 |
cctaataatgcatatgaagtcaa-------------gatgatgagcatgtgattcaatcaaaaacctgttgcaagatgaagcattgaatgcttctcctat |
294 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121388 |
cctaataatgcatatgaagtcaaaaataattaaaaagatgatgagcatgtgattcaatcaaaaacctgttgcaagatgaagcattgaatgcttctcctat |
10121289 |
T |
|
| Q |
295 |
ttgacaatggcctttccatccacgtggcactggtggcatgtcagtgtctctaaaacttggggattctggccagattcctgtgtgaacagtgtgataa-tg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || |
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| T |
10121288 |
ttgacaatggcctttccatccacgtggcactggtggcatgtcagtgtctctaaaacttggggattctggccagattcctgtatgaatagtgtgataaatg |
10121189 |
T |
|
| Q |
394 |
gttatgacttatgattaaaacctgttaatattcccatttattagcaaaatccaagtaaaatatagttattgccttaagtatttccaattggtcacattta |
493 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
10121188 |
gttatgacttatgattaaaacctgttaatattcccatttattagcaaaatccaagtaaaatatagttattgccttaactatttccaattggtcacattta |
10121089 |
T |
|
| Q |
494 |
agcttgaagttatcacactggaaaatatagttatgaaatgatgttcataaaagtaaaaggatnnnnnnngtgtgtaagtccatgtgaaaaccgactaata |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
10121088 |
agcttgaagttatcacactggaaaatatagttatgaaatgatgttcataaaagtaaaaggataaaaaaagtgtgtaaatccatgtgaaaaccgactaata |
10120989 |
T |
|
| Q |
594 |
aatgttttcacgagacttctaagaaaaggtgcatgttgtacgtgagaatgaaggtatagttacatagaagttatcaaaaaggcatcaccatactctaaga |
693 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10120988 |
aatgttttcacgagacttctaagaaaaggtgcatgttgtacgtgagaatgaaggtatagttacatagaagttatcaaaaaggcatcaccatactctaaga |
10120889 |
T |
|
| Q |
694 |
ataagaattcctacctgtatcaatgaaaccaacaatgatatttgcttggtttttgtttgagtatcccatattctccatggtttcatcatccaaaagtccc |
793 |
Q |
| |
|
||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10120888 |
atacga-----cacctgtatcaatgaaaccaacaataacatttgcttggtttttgtttgagtatcccatattctccatggtttcatcatccaaaagtccc |
10120794 |
T |
|
| Q |
794 |
ataaagtcccatgaatgagtagtatacaacnnnnnnnnnagaattggggaacacagaaactactcccgggcatttctgggtcacattcaaaccaaataaa |
893 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
10120793 |
ataaagtcccatgaatgagtagtatacaac-tttcttttagaattggggaacacagaaactactccc-ggcatttct-ggtcacattcaaaccaaataaa |
10120697 |
T |
|
| Q |
894 |
taagtaaacaacaaaaattataggatcctttaaggcattgaagctttaaggaagaggaaaatgtcactgacttgaaatttgg |
975 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10120696 |
taagtaaacaacaaaaattataggatactttaa-gcattgaagctttaaggaagaggaaaatgtcactgacttgaaatttgg |
10120616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 30628524 - 30628644
Alignment:
| Q |
43 |
gaagctgtatggctcccatgaccagagctgtctcttgcagatctgaaagagacttttttgtctgacccttcttctgcttcatatccactcatatagtatc |
142 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| || || |||||||| |||| |||| | |||| |||| |||||||||||||||||| ||||||||| |
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|
| T |
30628524 |
gaagctgtatggctaccatgacctgtgctgtccctagctgatctgaatgagatttttgcatttgactcttcctctgcttcatatccactcttatagtatc |
30628623 |
T |
|
| Q |
143 |
ttgctcctatcactttcctat |
163 |
Q |
| |
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||||||||||||||||||||| |
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| T |
30628624 |
ttgctcctatcactttcctat |
30628644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 256 - 373
Target Start/End: Original strand, 30628895 - 30629012
Alignment:
| Q |
256 |
aaacctgttgcaagatgaagcattgaatgcttctcctatttgacaatggcctttccatccacgtggcactggtggcatgtcagtgtctctaaaacttggg |
355 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||| || ||||||||| |||||||| ||||| || |||||||| |
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|
| T |
30628895 |
aaacctgttgcaagttgaggcattgaatgcttctcctgattgacaatgacctttccacccttgtggcactgcaggcatgtcggtgtcactgaaacttgga |
30628994 |
T |
|
| Q |
356 |
gattctggccagattcct |
373 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
30628995 |
gattctggccaaattcct |
30629012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 710 - 818
Target Start/End: Original strand, 30629840 - 30629948
Alignment:
| Q |
710 |
gtatcaatgaaaccaacaatgatatttgcttggtttttgtttgagtatcccatattctccatggtttcatcatccaaaagtcccataaagtcccatgaat |
809 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||| |||||| || | | | |||||||||| |||||| ||||||||||| || |||||||||| |
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|
| T |
30629840 |
gtatcaatgaaaccaatgatgatattttcttgatttttaactgagtagccaagagtttccatggtttgatcatctaaaagtcccatgaaatcccatgaat |
30629939 |
T |
|
| Q |
810 |
gagtagtat |
818 |
Q |
| |
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|||| |||| |
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|
| T |
30629940 |
gagttgtat |
30629948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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