View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5388-Insertion-5 (Length: 976)

Name: NF5388-Insertion-5
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5388-Insertion-5
NF5388-Insertion-5
[»] chr8 (3 HSPs)
chr8 (9-971)||(31857598-31858559)
chr8 (27-124)||(44916579-44916676)
chr8 (27-109)||(19292860-19292942)
[»] chr4 (6 HSPs)
chr4 (20-115)||(38168859-38168954)
chr4 (20-115)||(40765079-40765174)
chr4 (20-115)||(40770944-40771039)
chr4 (20-115)||(40777655-40777750)
chr4 (23-115)||(37088297-37088389)
chr4 (27-109)||(54786826-54786908)
[»] chr7 (1 HSPs)
chr7 (22-115)||(6600876-6600969)
[»] chr5 (10 HSPs)
chr5 (27-115)||(9371404-9371492)
chr5 (17-115)||(35970325-35970423)
chr5 (26-115)||(9212398-9212487)
chr5 (22-115)||(9365053-9365146)
chr5 (24-115)||(9290854-9290945)
chr5 (22-115)||(9333129-9333222)
chr5 (24-115)||(9306946-9307037)
chr5 (24-111)||(12558721-12558808)
chr5 (27-101)||(37897093-37897167)
chr5 (58-115)||(9354012-9354069)
[»] chr6 (1 HSPs)
chr6 (34-115)||(24694519-24694600)


Alignment Details
Target: chr8 (Bit Score: 860; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 860; E-Value: 0
Query Start/End: Original strand, 9 - 971
Target Start/End: Original strand, 31857598 - 31858559
Alignment:
Q  9 aagttaaactcaggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31857598 aagttaaactcaggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcg 31857697  T
Q  109 caaagatactataaactgctgtgtagctacgcttttataatatattggagcacttgatttttataactgagcgatgtgggactatatgtcaaggatattc 208  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||    
T  31857698 caaagataatataaactgctgtgtagctacgcttttataatatattggagcactttctttttataactgggcgatgtgggactatatgtcaagtatattc 31857797  T
Q  209 aagaagtccaaccagacagttattgttgtcaccaataatgtaccctctcagctccccaacgagctcttttcattcacagtttactatcaataccacttga 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  31857798 aagaagtccaaccagacagttattgttgtcaccaataatgtaccctctcagctccccagcgagctcttttcattcacagtttactgtcaataccacttga 31857897  T
Q  309 tcaagatattattattct-acgagcttaagagtttactcgaaaaatcaatttaatataaattattgtagcttgagattcttacagaagcagtttgcttgg 407  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31857898 tcaagatattattattctcacgagcttaagagtttactcgaaaaatcaatttaatataaactattgtagcttgagattcttacagaagcagtttgcttgg 31857997  T
Q  408 tagaataaaacatgaataaagtaaagtgtttttatcatatcttgagttttactgctccaatcaagttgattcgtgtactcttagaaagcttatggtatta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31857998 tagaataaaacatgaataaagtaaagtgtttttatcatatcttgagttttactgctccaatcaagttgattcgtgtactcttataaagcttatggtatta 31858097  T
Q  508 tctacaaccttcgtgttcatatcgaattccatttcttccgtgactatgtgaaatagttgaaaacaatacagacaatatgagggatggatgcatgatattc 607  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31858098 tctacaaccttcgtgttcatatcgaattccatttcttccgtgaccatgtgaaatagttgaaaacaatacagacaatatgagggatggatgcatgatattc 31858197  T
Q  608 gctcaggaatgttagaaacaaacggcaatacaacaagcttcatttattttctgtacaaatgatttaattcaagaaaattgctggaattcaagtgttaaga 707  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31858198 gctcaggaatgttagaaacaaacggcaatacaacaagcttcattcattttctgtacaaatgatttaattcaagaaaattgctggaattcaagtgttaaga 31858297  T
Q  708 catttttctttatgatgatattttgtatgtttctagaaatatacattcgtacgaaaattttttgttcagaagtacactttcggatgacacaaaattagtg 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||| |||| |||||||||||||||    
T  31858298 catttttctttatgatgatattttgtatgtttctagaaatatacatttgtacgaaaaaaatttgttcagaagtacacttccggacgacacaaaattagtg 31858397  T
Q  808 ttatttatatatgtatacattcgaactcatgttgggaggtgagaacttttttccctttatattttataagctatacaggaccaatccttagttagcatca 907  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  31858398 ttatttatagatgtatacattcgaactcatgttgggaggtgagaac-tttttccatttatattttataagctatacaggaccaatctttagttagcatca 31858496  T
Q  908 tcattgttaagatgtcaagggtttctctctttgtgagtgaaagaatggtagactccatcagctt 971  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31858497 tcattgttaagatgtcaa-ggtttctctctttgtgagtgaaagaatggtagactccatcagctt 31858559  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 44916579 - 44916676
Alignment:
Q  27 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagatactataaac 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| || |||||    
T  44916579 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcagttattacctcattagctacgtcattgccccaagcgcaaagatgctttaaac 44916676  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 19292860 - 19292942
Alignment:
Q  27 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||||||||||||    
T  19292860 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcagttatttcctcattagctacgtcattgccccaagcgc 19292942  T

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Target: chr4 (Bit Score: 92; Significance: 4e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 38168954 - 38168859
Alignment:
Q  20 aggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38168954 aggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagat 38168859  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 40765079 - 40765174
Alignment:
Q  20 aggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40765079 aggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagat 40765174  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 40770944 - 40771039
Alignment:
Q  20 aggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40770944 aggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagat 40771039  T

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Target: chr4; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 40777655 - 40777750
Alignment:
Q  20 aggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40777655 aggcttaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagat 40777750  T

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Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 37088297 - 37088389
Alignment:
Q  23 cctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||    
T  37088297 cctaagagggggtttggaaatagttttcaaccagcaatagacgcacctcggttggaacctcattagctgcgtcattgccccaagcgcaaagat 37088389  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 54786826 - 54786908
Alignment:
Q  27 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||||||||||||    
T  54786826 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcagttatttcctcattagctacgtcattgccccaagcgc 54786908  T

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Target: chr7 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 6600876 - 6600969
Alignment:
Q  22 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6600876 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagat 6600969  T

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Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 9371492 - 9371404
Alignment:
Q  27 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371492 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 9371404  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 35970325 - 35970423
Alignment:
Q  17 ctcaggcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  35970325 ctcaagcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcattagctgcgtcattgccccaagcgcaaagat 35970423  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 9212398 - 9212487
Alignment:
Q  26 aagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9212398 aagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagat 9212487  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 9365146 - 9365053
Alignment:
Q  22 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9365146 gcctaagagtgggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcatcattgccccaagcgcaaagat 9365053  T

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Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 9290854 - 9290945
Alignment:
Q  24 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9290854 ctaagagagggtttggaaatagttttcaaccagcaattgacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 9290945  T

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Target: chr5; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 9333222 - 9333129
Alignment:
Q  22 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||||| | ||||||    
T  9333222 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcagttaattcctcactagctgcgtcattgccccaagtgaaaagat 9333129  T

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Target: chr5; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 9307037 - 9306946
Alignment:
Q  24 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||| ||||||| |||||||    
T  9307037 ctaagagggggtttgaaaattgttttcaaccagcaatagacgtgcctcggttaatacctcactagctgcatcattggcccaagcacaaagat 9306946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 12558808 - 12558721
Alignment:
Q  24 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaa 111  Q
    |||||||||| |  ||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||| ||||    
T  12558808 ctaagaggggatcaggaaatagttttcaaccagcaatagacacgcctcggttagaacctcactagatgcgtcattgccccaagtgcaa 12558721  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 37897093 - 37897167
Alignment:
Q  27 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgcc 101  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||| |||| |||||| |||||| ||||||||||    
T  37897093 agagagggtttggaaatagtttccaaccagcaatagacgcggctcagttattacctcgttagctacgtcattgcc 37897167  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 9354069 - 9354012
Alignment:
Q  58 aatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  9354069 aatagacgcgcctcagttaatacctcactagctgcgtcattgccccaagcgcaaagat 9354012  T

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Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 24694600 - 24694519
Alignment:
Q  34 gtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 115  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  24694600 gtttgaaaatagttttcaaccagcaatagacgtgcctcggttagaacctcattagttgcgtcattgccccaagcgcaaagat 24694519  T

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