View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5388-Insertion-6 (Length: 699)
Name: NF5388-Insertion-6
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 57 - 629
Target Start/End: Original strand, 34460338 - 34460920
Alignment:
| Q |
57 |
gatctcaaatcaatgagccgcctgatcgatcgagatcaattaatgcatattttaaatgaagagaatccaaatccaaaagagcagcagcaagttatgnnnn |
156 |
Q |
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| T |
34460338 |
gatctcaaatcaatgagccgcctgatcgatggagatcaattaatgcatattttaaatgaagagaatccaaatccaaaagagcagcagcaagttatgtttt |
34460437 |
T |
|
| Q |
157 |
nnnnagcacaagacatatatagtaa----------ggtgaaataacaaaaacatttccatatttgaatctaaataagcaacaagacaatttggcatgaac |
246 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34460438 |
ttttagcacaagacatatatagtaaaccctaaataggtgaaataataaaaacatttccatatttgaatctaaataagaaacaagacaatttggcatgaac |
34460537 |
T |
|
| Q |
247 |
gtggaaaatgatgattggcttaccgaaatctggttaacataatcacgatgaaaggcagcaatatgtccggtataacggtcaacgaacagaaatctcctga |
346 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34460538 |
gtggcaaatgatgattggcttaccgaaatctggttaacataatcacgatgaaaggcagcaatatgtccggtataacggtcaacgaacagaaatctcctga |
34460637 |
T |
|
| Q |
347 |
gtccatatttccgcaaacagtgggaaagacagagcaatgaaacagcagcaagactcgcctgaaacgccacgatcaccatctcgcaaccgcttaattcgta |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34460638 |
gtccatatttccgcaaacagtgggaaagacagagcaatgaaacagcagcgagactcgcctgaaacgccacgatcaccatctcgcaaccgcttaattcgta |
34460737 |
T |
|
| Q |
447 |
cttttcgcactctgaacagtcgcccatccatagcgccaccagtggaaccgccactccaagcgtgaagaaaccggaccagcaaattatagaggatagaatt |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34460738 |
cttttcgcactctgaacagtcgcccatccatagcgccaccagtggaaccgccactccaagcgtgaagaaaccggaccagcaaattatagaggatagaatt |
34460837 |
T |
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| Q |
547 |
gaacgtggattgaaccctaagatgtttagaaacaattccaaacgtgcaaggcttttatctacttcggttttgttattagtttc |
629 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34460838 |
gaacgtggattgaaccctaagatgtttagaaacaattccaaacgtgcaaggcttttatctacttcggttttgttattagtttc |
34460920 |
T |
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