View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5388-Insertion-7 (Length: 643)
Name: NF5388-Insertion-7
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388-Insertion-7 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 8 - 643
Target Start/End: Original strand, 35068645 - 35069274
Alignment:
| Q |
8 |
gtaagtctatctcctagcagtgtatatttgaagaataacacttaaaaattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35068645 |
gtaagtctatctcctagcagtgtatatttgaagagtaacacttaaaaattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaa |
35068744 |
T |
|
| Q |
108 |
atgagaaaaacaagtatttgtagctgagcagtatttttcatatcactgnnnnnnnnnttgtctgatgaaaatagcagcaacggtttacatcaaaagaaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35068745 |
atgagaaaaacaagtatttgtagctgagcagtatttttcatatcactgaaaaaaaa-ttgtctgatgaaaatagcagcaacggtttacatcaaaagaaaa |
35068843 |
T |
|
| Q |
208 |
gataaagacaacattgtgtagcatgcaagaaatggtataattttccaaaatgtgcannnnnnnagtagtcacctaccatatgtaaaaggacacaacatca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
35068844 |
gataaagacaacattgtgtagcatgcaagaaatggtataattttccaaattgtgcatttttttagtagtcacctaccatgtgtaaaaggacacagcatca |
35068943 |
T |
|
| Q |
308 |
caaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagaggagattaataagtgtaagggaaggattgaatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35068944 |
caaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagaggagattaataagtgtaagggaaggattgaatt |
35069043 |
T |
|
| Q |
408 |
gatagaaaaaattaaattgcttaagagaatggagccaccttttctagcaannnnnnnggtagctctttcatttccactctttgttcagtccttggtgcgt |
507 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35069044 |
gacagaaaaaattcaattgcttaagagaatggagccacgttttctagcaatttttttggtagctctttcatttccactctttgttcagtccttggtgcgt |
35069143 |
T |
|
| Q |
508 |
cattacaattttagtgtaagtacacttcttatgctcaatttttcagattcattttaattgnnnnnnnnnncgtaagattagttattaagagaaacagttg |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||| ||||||||| ||||| |
|
|
| T |
35069144 |
cattacaattttagtgtaagtacacttcttatgctcaatttttcagattcattttaagtg-----aaaaacgtgacattagttaataagagaaaaagttg |
35069238 |
T |
|
| Q |
608 |
gcataaaagcattatcaaaataatgcttcctaaatt |
643 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35069239 |
gaataaaagcattatcaaaataatgcttcctaaatt |
35069274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Original strand, 35052726 - 35053280
Alignment:
| Q |
8 |
gtaagtctatctcctagcagtgtatatttgaagaataacacttaaaaattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaa |
107 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35052726 |
gtaagtctatctcatagcggtgtatatttgaagagtaacacttaaaaattaaaatataaacatacaagggaaatggtggtcaagaaaaatggtaattcaa |
35052825 |
T |
|
| Q |
108 |
atgagaaaaacaagtatttgtagctgagcagtatttttcatatcactgnnnnnnnnn-ttgtctgatgaaaatagcagcaacggtttacatcaaa-agaa |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
35052826 |
atgagaaaaacaagcatttgtagctgagcagtatttttcatatcaccgaaaaaaaaaattgtctgatgaaaatagcagcaatggtttacatcaaacagaa |
35052925 |
T |
|
| Q |
206 |
aagataaagacaacattgtgtagcatgcaagaaatggtataattttccaaaatgtgcannnnnnnagtagtcacctaccatatgtaaaaggacacaacat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| | |
|
|
| T |
35052926 |
aagataaagacaacattgtgtagcatgcaagaaatggtataattttccaaattgtgcatttttt-agtagtcacctaccatgtgtaaaaggacacaacct |
35053024 |
T |
|
| Q |
306 |
cacaaattattccattatatataatgttaatgtgcttggtccatacttaagtattgatcaaactatagaggagattaataagtgtaagggaaggattgaa |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
35053025 |
cacaaattattccattatatataatgttaatgtgcttggtc-atacttaagtattgatcaaaccatagaggagattcataagtgtaagggaaagattgaa |
35053123 |
T |
|
| Q |
406 |
ttgata--gaaaaaattaaattgcttaagagaatggagccaccttttctagcaannnnnnnggtagctctttcatttccactctttgttcagtccttggt |
503 |
Q |
| |
|
|||| | |||||| || |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35053124 |
ttgacaaagaaaaattttaattgcttaagagaatggagccacgttttctagcaatttttttggtagctctttcatctccactctttgttcagtccttggt |
35053223 |
T |
|
| Q |
504 |
gcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcagattcatt |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35053224 |
gcgtcattacaattttagtgtaagtacacttcttatgctcaatttttcaggttcatt |
35053280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 604 - 639
Target Start/End: Original strand, 35053312 - 35053347
Alignment:
| Q |
604 |
gttggcataaaagcattatcaaaataatgcttccta |
639 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35053312 |
gttggcataaaagcattatcaaaatagtgcttccta |
35053347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University