View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5388-Insertion-8 (Length: 554)
Name: NF5388-Insertion-8
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 4133156 - 4133699
Alignment:
| Q |
8 |
attaccacacgcctttcgatagttcataaaccaatacaa-ttcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4133156 |
attaccacacgcctttcgatagttcataaaccaatacaaattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctg |
4133255 |
T |
|
| Q |
107 |
aaaggtcccggtcaaggcattccttttccatctttctaatctctcaaagttaccgcctatatagatgtggattggggcagctgccaagtttctaaaaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
4133256 |
aaaggtcccggtcaaggcattccttttccatctttctaatctctcaaagttaccgcctatgtagacgtggattggggcagctgccaagtttctaaaaaat |
4133355 |
T |
|
| Q |
207 |
acacaaccgattatggcatatttcttggtgactcctcgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacat |
306 |
Q |
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| T |
4133356 |
acacaaccgattatggcatatttcttggtgactccttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacat |
4133455 |
T |
|
| Q |
307 |
tgccatttctgccttcacatctgagttattgtggcggcatagacaattattcagagcttttgatgttattgttgatttaagtatggttaccaaaaatcga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |
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| T |
4133456 |
tgccatttctgccttcacatctgagttattgtggcggcatagacaattattcagagcttttgttgttattgttgatttaagtatggttactaaaaattga |
4133555 |
T |
|
| Q |
407 |
gttattttttatacagggccatttctaattttattaccaaataaaataaagatgagggaatgaggagcaagtaatgtagctacctacctggatggtaact |
506 |
Q |
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| T |
4133556 |
gttattttttatacagggccatttctaattttattaccaaataaaataaagatgagggaatgaggagcaagtaatgtagctacctacctggatggtaact |
4133655 |
T |
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| Q |
507 |
tcatcttcttcggcttcagacaggaagcatctccacctcattca |
550 |
Q |
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| T |
4133656 |
tcatcttcttcggcttcagacaggaagcatctccacctcattca |
4133699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 244 - 383
Target Start/End: Complemental strand, 41080555 - 41080419
Alignment:
| Q |
244 |
gatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttattgtggcgg |
343 |
Q |
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| T |
41080555 |
gatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttattgt---ga |
41080459 |
T |
|
| Q |
344 |
catagacaattattcagagcttttgatgttattgttgatt |
383 |
Q |
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| T |
41080458 |
catagacaattactcacagctttagatgttattgttgatt |
41080419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 180 - 341
Target Start/End: Complemental strand, 41091958 - 41091808
Alignment:
| Q |
180 |
ggggcagctgccaagtttctaaaaaatacacaaccgattatggcatatttcttggtgactcctcgatagattggaaattgaagaagcaagctattgttgc |
279 |
Q |
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|||| ||||||||||||||| |||||| ||||||| |||| |||||||||||| |||| ||||||| ||||||| || |||||||||| |
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| T |
41091958 |
ggggaagctgccaagtttcttaaaaattcacaaccacttattgcatatttcttg-----------atagcttggaaaccgaagaagtaaactattgttgc |
41091870 |
T |
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| Q |
280 |
tcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttattgtggc |
341 |
Q |
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|||||||| |||||||||||||| | |||||| ||||| |||||||||||||| |||||| |
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| T |
41091869 |
tcgctcttctgcagaggctgaatagagggccattgctgccctcacatctgagttactgtggc |
41091808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 41102145 - 41101987
Alignment:
| Q |
44 |
caattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggt---cccggtcaaggcattccttttccatctt |
140 |
Q |
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|||||||||||| |||| |||| |||||||||||| | || ||||| |||| |||||||||||| || || ||||||||||||| ||||||| || |
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| T |
41102145 |
caattcatggctcatcctaggacctctcatttacaagatgtccaccatctgttgcaatacctgaaaagtactccaggtcaaggcattctttttccagcta |
41102046 |
T |
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| Q |
141 |
tctaatctctcaaagttaccgcctatatagatgtggattggggcagctgccaagtttct |
199 |
Q |
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| T |
41102045 |
cccaatctctcaaagttactgtctatgtggacgcggattggcacagttgccaagtttct |
41101987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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