View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5388-Insertion-9 (Length: 436)
Name: NF5388-Insertion-9
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 22 - 433
Target Start/End: Original strand, 3246164 - 3246569
Alignment:
| Q |
22 |
gcattcccttgcttcccactgcttttgcaactaattttgtccaagacaacggctggtttgtaactttcgctttttctaacattaaaattgttggttgata |
121 |
Q |
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| T |
3246164 |
gcattcccttgcttcc-actgcttttgcaactaattttgtccaagacaacg-ctggtttgta-cttt-gctttttctaacattaaaattgttggttgata |
3246259 |
T |
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| Q |
122 |
taagatatattaaaattttgagtttattatgctaatttaacaacaccaaagaaggtaatttatgggtgaggatcaatgtaataccgacacttttgatcaa |
221 |
Q |
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| T |
3246260 |
taggatatattaaaattttgagtttattatgctaatttaacaacaccgaagaaggtaatttatgggtgaggatcaatgtaatactgacacttttgatcaa |
3246359 |
T |
|
| Q |
222 |
aatatccatggtggccaacacgcgtggcactggtacatatgattatatctaataaattttatcatatcaaattattgtatgagtgtttttatcgtgtttg |
321 |
Q |
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|| || |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
3246360 |
aagatgcatggtggccaatacgcgtgacactgatacatatgattatatctaataaattttatcatatcaaattattg--tgagtgtttttatggtgtttg |
3246457 |
T |
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| Q |
322 |
gtattttggtcatgtttcataagtgaaggtcaaacaaagttttaaatctaaatccttaatatcgtaaagaatagcggagaattatgtttaaatgggcacg |
421 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3246458 |
gtattttggtcatgtttcataagtgaaggtcgaacaaagttttaaatctaaatccttaatatcgtaaagaatagtggagaattatgtttaaatgggcacg |
3246557 |
T |
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| Q |
422 |
atgcagcccaaa |
433 |
Q |
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| T |
3246558 |
atgcagcccaaa |
3246569 |
T |
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