View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5388_high_1 (Length: 504)
Name: NF5388_high_1
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 4133160 - 4132685
Alignment:
| Q |
18 |
gtaatattatcaaagtgtcaagttgttattagctagaaggtgttgtggaagtggactgatgtgaggaactaattggttagtagcagtaaaatttgaatcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133160 |
gtaatattatcaaagtgtcaagttgttattagctagaaggtgttgtggaagtggactgatgtgaggaactaattggttagtagcagtaaaatttgaatcg |
4133061 |
T |
|
| Q |
118 |
gaagggtctgatggtgtggctatctaaaccgttgcaacatatgttgcttccagatttgtggaattagcaacaagggatatacaagaaattggaaatgcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133060 |
gaagggtctgatggtgtggctatctaaaccattgcaacatatgttgcttccagatttgtggaattagcaacaagggatatacaagaaattggaaatgcat |
4132961 |
T |
|
| Q |
218 |
cttggtgttatctgtgtggagtgtaattcaaaggtcgctataaagttttggtgtgtataactatgctattttgcggtcttgtattctggcgcagcacgtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
4132960 |
cttggtgttatctgtgtggagtgtaattcaaaggtcgctataaagttttggtgtgtataactatgctattttgcggtcttgtattttggcgcagcatgtt |
4132861 |
T |
|
| Q |
318 |
gatgtctttctcagcagagtgcagaaacgattgggaatatttgtgctctgactattggattatttctctttatggagggtgtgactttgagccaatagtt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4132860 |
gatgtctttctcagcagagtgcagaaacgattgggaatatttgtgctctgactattggattatttctctttatggagggtgtgactttgagccaatagtt |
4132761 |
T |
|
| Q |
418 |
ctcaaacttcaatgaatgtgattcgtgagaattggaagtagctagcttttcattttgtgattgtagttcgttctgt |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4132760 |
ctcaaacttcaatgaatgtgattcgtgagaattggaagtagctagcttttcattttgcgattgtagttcgttctgt |
4132685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 43142144 - 43142220
Alignment:
| Q |
192 |
ggatatacaagaaattggaaatgcatcttggtgttatctgtgtggagtgtaattcaaaggtcgctataaagttttgg |
268 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||| |||| | | |||| ||| | ||||||||||| |
|
|
| T |
43142144 |
ggatatacaagaaattggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttgg |
43142220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University