View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5388_high_2 (Length: 460)
Name: NF5388_high_2
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 44457707 - 44457279
Alignment:
| Q |
11 |
cacagactcgtcgacaaaaataataatttgnnnnnnntgatttaactgaatttaaccattttcgtctatgtcaaacactgaaaggtgtcaaacatgggat |
110 |
Q |
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| T |
44457707 |
cacagactcgtcgacaaaaataataatttgaaaaaa-tgatttaactgaatttaaccattttcgtctatgtcaaacactgaaacgtgtcaaacatgggat |
44457609 |
T |
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| Q |
111 |
acaccttcaatagatgtgtcagtgctagacagtgaaaaacccttttcattctaatactaagaaatgaacaaacaatattaaatagtggtgtagtaaatga |
210 |
Q |
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| T |
44457608 |
acaccttcaatagatgtgtcagtgctagacagtgaaaaacccttttcattctaatactaagaaatgaacaaacaatattaaatagtggtgtagtaaatga |
44457509 |
T |
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| Q |
211 |
aagaagttgaagaaaattacgtggttggggaaaagagaagttgatgttctcatgctgctgctgctgaggatgaacatgatgaagaggtggaggaggagtt |
310 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44457508 |
aagaaattgaagaaaattacgtggttgtggaaaagagaagttgatgttctcatgctgctgctgctgaggatgaacatgatgaagaggtagaggaggagtt |
44457409 |
T |
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| Q |
311 |
gcatgaaggaaacgacagttgtttccatagctacaatgtctggtgtgcatgaacattctacatagtcttggtcctgttgctgttctgaggtcgtggtagc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44457408 |
gcatgaaggaaacgacagttgtttccatagctacaatgtctggtgtgcatgaacattctacatagtcttggtcctgttgctgttctgaggtcgtggtagc |
44457309 |
T |
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| Q |
411 |
catgtgcatagttgcattggggtgcaacaa |
440 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44457308 |
catgtgcatagttgcattggggtgcaacaa |
44457279 |
T |
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