View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5388_low_3 (Length: 495)
Name: NF5388_low_3
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 181 - 456
Target Start/End: Complemental strand, 478785 - 478510
Alignment:
| Q |
181 |
atgatgatggtgattaggatttgtatgaatcatctctatgttcctatttggtaatttgaggtctggaacaataaaatctgagttcctatgatcatcgcag |
280 |
Q |
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| T |
478785 |
atgatgatggtgattaggatttgtatgaatcccctctatgttcctatttgctaatttgaggtccggaacaataaaatccgagttcctatgatcatcgcag |
478686 |
T |
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| Q |
281 |
tttaaaaaatagatcaaaatcaatttcttagcttaaggtctcttatacatcaccctataatgtcttagacaaaaactagtattatcaaaaatttgattga |
380 |
Q |
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| T |
478685 |
tttaaaaaatagatcaaaatcaatttcttagcttaaggtctcttatacatcaccctataatgtcttagacaaaaactagtattatcaaaagtttgattga |
478586 |
T |
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| Q |
381 |
acattaaactattactcacactggttgatttcctatgtgtagataaattaaccatagaacactacaccaagttctc |
456 |
Q |
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| T |
478585 |
acattaaactattactcacactggttgatttcctatgtgtagataaattaaccatagaacactacaccaagttctc |
478510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 479366 - 479210
Alignment:
| Q |
26 |
aaaatgcggcatataaagacagtataacatcatgtggaacagaaaaccataactagtttagataagtccaatgctttgtgcaccgtccattattgagtca |
125 |
Q |
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| T |
479366 |
aaaatgcggcatataaagacggtataacatcatgtggaacagaaaaccataactagtttagataagtccaatgctttgtgcaccatccatcattgagtca |
479267 |
T |
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| Q |
126 |
acaacataagtgacgattttttggcaagtactaaaacatcttcaaagtaataaacat |
182 |
Q |
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| T |
479266 |
acaacataagtgacgattttttggcaagtactaaaacatcttcaaagtaataaacat |
479210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 430 - 484
Target Start/End: Complemental strand, 478499 - 478446
Alignment:
| Q |
430 |
aaccatagaacactacaccaagttctcgggttataaaatctagtgttgatagtga |
484 |
Q |
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| T |
478499 |
aaccatagaaca-tacaccaagttctcgggttataaaatctagtgttgatagtga |
478446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 479419 - 479383
Alignment:
| Q |
1 |
ttagcagatttaaatcccacataacaaaatgcggcat |
37 |
Q |
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| T |
479419 |
ttagcatatttaaatcccaaataacaaaatgcggcat |
479383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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