View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5388_low_5 (Length: 398)
Name: NF5388_low_5
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5388_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 8027994 - 8028366
Alignment:
| Q |
18 |
attaaagttaagagggattaagataactatctcttacccatattctgttaaaatgtacacaacattgactaaacttttgttccatcannnnnnnn----g |
113 |
Q |
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| T |
8027994 |
attaaagttaagagggattaagataactatctctcacccatattttgttaaaatgtacacaacattgactaaacttttgttccatcattttttttttttg |
8028093 |
T |
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| Q |
114 |
tctgttacagtattatataattcttattgtcccggtacatatagatgaatgggtgatgatttatgttgattata--cattctatatgttcagccttatga |
211 |
Q |
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| T |
8028094 |
tctgttacagtattata--attcttattgtcccggtacatatagatgaatgggtgatgatttatgttgattatatacattctatatgttcagccttatga |
8028191 |
T |
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| Q |
212 |
agagcattacgttaaggatgaggccataccttggatgatctagaaaataaactatagctcaattttttaatatcgtgtttgttctaattttctgtgtgcc |
311 |
Q |
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| T |
8028192 |
agagcattacgttaaggatgaagccataccttggatgatctagaaaataaactatagctcaattttttaatatcgtgtttgttctaattttctgtgtgcc |
8028291 |
T |
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| Q |
312 |
ttaaaagtgagtgcagaaactgtcatggcaaattaaattatggttctcgaccgattgaattttgacctatgatga |
386 |
Q |
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| T |
8028292 |
ttaaaagtgagtgcagaaactgtcatggaaaattaaattatggttctcgaccaattgaattatgacctatgatga |
8028366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 8018516 - 8018645
Alignment:
| Q |
133 |
attcttattgtcccggtacatatagatgaatgggtgatgatttatgttgattatacattctatatgttcagccttatgaagagcattacgttaaggatga |
232 |
Q |
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| T |
8018516 |
attcttattgtccgtgaatatatagatgaatgggtgatgttttatgttgattatacattctatatgttcagccttttgaagagcattacactaaggatga |
8018615 |
T |
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| Q |
233 |
ggccataccttggatgatctagaaaataaa |
262 |
Q |
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| T |
8018616 |
ggccataccttggatgatccagaaaataaa |
8018645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 8018883 - 8018974
Alignment:
| Q |
281 |
atatcgtgtttgttctaattttctgtgtgccttaaaagtgagtgcagaaactgtcatggcaaattaaattatggttctcgaccgattgaatt |
372 |
Q |
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| T |
8018883 |
atatagtgtttgttctaatttgttgtgtgccttgaaagtgagtgcagaaactgtcatggcaaattaaattatggttcttgatcaattgaatt |
8018974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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