View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5388_low_8 (Length: 322)

Name: NF5388_low_8
Description: NF5388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5388_low_8
NF5388_low_8
[»] chr5 (1 HSPs)
chr5 (23-322)||(40064273-40064572)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 40064572 - 40064273
Alignment:
Q  23 gatagatacacacactttcattgtcnnnnnnngatacacactaattaagttgtgatatggtttgaattaagcctttttaatggttttaaatatatgaaag 122  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40064572 gatagatacacacactttcattgtcaaaaaaagatacacactaattaagttgtgatatggtttgaattaagcctttttaatggttttaaatatatgaaag 40064473  T
Q  123 taaaccaatctctttaattgatttagtgccagatattctttcatacttgattcataatgtatcacgaagtaagcataaaattttatcaagtctaacaaaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40064472 taaaccaatctctttaattgatttagtgccagatattctttcatacttgattcataatgtatcacgaagtaagcataaaattttatcaagtctaacaaaa 40064373  T
Q  223 aagttggcaggcaaagtgttgcaattggccctcattcagttatattttagccatatatacttctagtcttccattgtcatcattaatttttagtttatgc 322  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40064372 aagttggcaggcaaagtgttgcagttggccctcattcagttatattttagccatatatacttctagtcttccattgtcatcattaatttttagtttatgc 40064273  T

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