View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5389_low_1 (Length: 432)
Name: NF5389_low_1
Description: NF5389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5389_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 45 - 267
Target Start/End: Complemental strand, 4379153 - 4378931
Alignment:
| Q |
45 |
gtgcaaaacgtgcacacgtaaatgtacttttgacaacaataataatgaaggaaaactagctataaatccgtactaaacatatccataaagatgaaggcat |
144 |
Q |
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| T |
4379153 |
gtgcaaaacgtgcacacgtaaatgtacttttgacaacaataataatgaagaaaaactagctataaatccgtactaaacatatccataaagatgaaggcat |
4379054 |
T |
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| Q |
145 |
tgctttgctgatacccattctacctttacctgttattgtctgtatgatgccattaatttattacttttacttctgtacacaagacagggccttgatcctc |
244 |
Q |
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| T |
4379053 |
tgctttgctgatacccattctacctttacctgttactgtctgtatgatgccattaatttattacttttacttctgtacagaagacagggccttgatcctc |
4378954 |
T |
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| Q |
245 |
tgctataaagtccaccatgcacg |
267 |
Q |
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| T |
4378953 |
tgctataaagtccaccatgcacg |
4378931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 329 - 417
Target Start/End: Complemental strand, 4378869 - 4378782
Alignment:
| Q |
329 |
gttcccaccgttctgtctgcaccaaaaatgagactaaaatcacttaagttttcttcatggaccacacactgtagttcaacttcaacttg |
417 |
Q |
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| T |
4378869 |
gttcccaccgttctgtctgcaccaaaaatgagactaaaatcact-aagttttcttcatggaccacacactgtagttcaacttcaacttg |
4378782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 31714718 - 31714671
Alignment:
| Q |
346 |
tgcaccaaaaatgagactaaaatcacttaagttttcttcatggaccacac |
395 |
Q |
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| T |
31714718 |
tgcaccaaaaatgagactaaaatca-ataagttttc-tcatggaccacac |
31714671 |
T |
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