View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5389_low_3 (Length: 342)

Name: NF5389_low_3
Description: NF5389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5389_low_3
NF5389_low_3
[»] chr1 (6 HSPs)
chr1 (211-272)||(2887803-2887865)
chr1 (211-264)||(2903926-2903980)
chr1 (211-264)||(2892439-2892493)
chr1 (292-334)||(2887741-2887783)
chr1 (114-154)||(2887914-2887954)
chr1 (114-150)||(2904022-2904058)
[»] chr2 (1 HSPs)
chr2 (292-325)||(4653879-4653912)
[»] chr7 (1 HSPs)
chr7 (211-260)||(48871528-48871578)
[»] chr3 (1 HSPs)
chr3 (216-264)||(1516605-1516654)
[»] chr4 (1 HSPs)
chr4 (299-327)||(23397484-23397512)


Alignment Details
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 2887865 - 2887803
Alignment:
Q  211 cataccatggtattgacacctttggagaa-cctctccaaaatcttgagacatgttaatgatgc 272  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2887865 catagcatggtattgacacctttggagaagcctctccaaaatcttgagacatgttaatgatgc 2887803  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 2903980 - 2903926
Alignment:
Q  211 cataccatggtattgacacctttggagaa-cctctccaaaatcttgagacatgtt 264  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  2903980 cataccatggtattgacacctttggagaagtctctccaaaatcttgagacatgtt 2903926  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 2892493 - 2892439
Alignment:
Q  211 cataccatggtattgacacctttggagaa-cctctccaaaatcttgagacatgtt 264  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  2892493 cataccatggtattgacacctttggagaagtttctccaaaatcttgagacatgtt 2892439  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 2887783 - 2887741
Alignment:
Q  292 gagggagagtcgaaattaagttccaaacttatctttgatgatg 334  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  2887783 gagggagagtcgaaattaagttccaaacttatctctgaggatg 2887741  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 2887954 - 2887914
Alignment:
Q  114 agtaactgttaatgttatcatttaaattaaagtgcctaggc 154  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  2887954 agtaactgttattgttatcatttaaattaaagtgtctaggc 2887914  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 2904058 - 2904022
Alignment:
Q  114 agtaactgttaatgttatcatttaaattaaagtgcct 150  Q
    |||||||||||||||||||||| |||||| |||||||    
T  2904058 agtaactgttaatgttatcattcaaattacagtgcct 2904022  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 4653912 - 4653879
Alignment:
Q  292 gagggagagtcgaaattaagttccaaacttatct 325  Q
    ||||||||||||||||||||||||||||||||||    
T  4653912 gagggagagtcgaaattaagttccaaacttatct 4653879  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 48871528 - 48871578
Alignment:
Q  211 cataccatggtattgacacctttggagaa-cctctccaaaatcttgagaca 260  Q
    |||||||||||||||||||||||||||||  |||||||||| ||| |||||    
T  48871528 cataccatggtattgacacctttggagaagtctctccaaaaccttcagaca 48871578  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 1516654 - 1516605
Alignment:
Q  216 catggtattgacacctttggagaac-ctctccaaaatcttgagacatgtt 264  Q
    |||||||||||||||||| |||||  ||||| ||||||||||||||||||    
T  1516654 catggtattgacacctttcgagaagtctctctaaaatcttgagacatgtt 1516605  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Original strand, 23397484 - 23397512
Alignment:
Q  299 agtcgaaattaagttccaaacttatcttt 327  Q
    |||||||||||||||||||||||||||||    
T  23397484 agtcgaaattaagttccaaacttatcttt 23397512  T

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