View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5389_low_4 (Length: 326)
Name: NF5389_low_4
Description: NF5389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5389_low_4 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 6145444 - 6145762
Alignment:
| Q |
8 |
catcatcacactttccatcataacaatcagccacaacattattttgcacattcttataagtatacctttgagcaaagagcacaaacactaacacactcaa |
107 |
Q |
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| T |
6145444 |
catcatcacactttccatcataacaatcagccacaacattattttgcacattcttataagtatacctttgagcaaagagcacaaacacaaacacactcaa |
6145543 |
T |
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| Q |
108 |
tgaagttatagctgccaatagccaatagaatttatccaaacgactactattcaaatcttcaccaaaccaacttttaccacttttacttgtcacatgatca |
207 |
Q |
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| T |
6145544 |
tgtagttatagctgccaatagccaatagaatttatccaaacgactactattcaaatcttcaccaaaccaacttttaccacttttacttgtcacatgatca |
6145643 |
T |
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| Q |
208 |
acaattgttatcaacaaactacttagaaaattggcagctccaatcacactaaggtaaagtccaattcccaaacttctcattgaatcgggcacttggtcat |
307 |
Q |
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| T |
6145644 |
acaattgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtccaattcccaagcttctcattgaatcaggaacttgatcat |
6145743 |
T |
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| Q |
308 |
agacattttcttgtaaacc |
326 |
Q |
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| T |
6145744 |
agaaatattcttgtaaacc |
6145762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 49 - 323
Target Start/End: Original strand, 23692308 - 23692582
Alignment:
| Q |
49 |
ttttgcacattcttataagtatacctttgagcaaagagcacaaacactaacacactcaatgaagttatagctgccaatagccaatagaatttatccaaac |
148 |
Q |
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| T |
23692308 |
ttttgcacatttttgtatgaatatcttctagcaaagaacacaaacaagaacaaattcaccgtagttatagctgccaatagccaataaaatttgtccaatc |
23692407 |
T |
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| Q |
149 |
gactactattcaaatcttcaccaaaccaacttttaccacttttacttgtcacatgatcaacaattgttatcaacaaactacttagaaaattggcagctcc |
248 |
Q |
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| T |
23692408 |
tactactattcaaatccttaccaaaccaactcttcccatttttctttgttatatgatcaacaattgttatcaacacactactaataaaatttgcagctcc |
23692507 |
T |
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| Q |
249 |
aatcacactaaggtaaagtccaattcccaaacttctcattgaatcgggcacttggtcatagacattttcttgtaa |
323 |
Q |
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| T |
23692508 |
aatcacacttaaataaaaagctatacctaagcttctcattgaatcaggaacttggtcatagaaatattcttgtaa |
23692582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 326
Target Start/End: Original strand, 31074771 - 31074928
Alignment:
| Q |
169 |
ccaaaccaacttttaccacttttacttgtcacatgatcaacaattgttatcaacaaactacttagaaaattggcagctccaatcacactaaggtaaagtc |
268 |
Q |
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|||| ||||||||||||| | || |||||| ||||| ||||| || || || |||||||||| ||| | || |||||||||||||||| || | | |
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| T |
31074771 |
ccaatccaacttttaccattcttttctgtcacttgatccacaatagtgattaaaaaactacttaagaaacttccaactccaatcacactaagatataatg |
31074870 |
T |
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| Q |
269 |
caattcccaaacttctcattgaatcgggcacttggtcatagacattttcttgtaaacc |
326 |
Q |
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| T |
31074871 |
ccattcccaaactcttcattgagtcaggaacttggccatagaaatactcttgtaaacc |
31074928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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