View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5389_low_7 (Length: 236)
Name: NF5389_low_7
Description: NF5389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5389_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6146010 - 6146231
Alignment:
| Q |
1 |
attgcgacagaaattatcataccaatagcggaaatagtgaaaattgaagctggtggaatctcaaaaccatgtcctatttttctattcattatattacctt |
100 |
Q |
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| T |
6146010 |
attgcgacagaaattatcataccaatagcggaaatagtgaaaattgaagcgggtggaatctcgaaaccatgtcctatttttctattcattatattacctt |
6146109 |
T |
|
| Q |
101 |
gcttgataaagaaagttgatgtttgtgcagcacacattccaaatggtaaagtaaatatccaaattgggatcatgttgatcataagcttcatttcttcaac |
200 |
Q |
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| T |
6146110 |
gcttgataaagaaagttgatgtttgtgcagcacacattccaaatggtaaagtaaatatccaaattgggatcatgttgatcataagcttcatttcttcaac |
6146209 |
T |
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| Q |
201 |
tctagtgactgttgctagtttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
6146210 |
tctagtgactgttgctagtttc |
6146231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 23692851 - 23693020
Alignment:
| Q |
37 |
gtgaaaattgaagctggtggaatctcaaaaccatgtcctatttttctattcattatattaccttgcttgataaagaaagttgatgtttgtgcagcacaca |
136 |
Q |
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|||||||||||||||||||||| ||||| | | ||||| ||||||||||||||| || ||| ||||| ||||| |||||||||||||| ||| | |
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| T |
23692851 |
gtgaaaattgaagctggtggaagttcaaacctttcacctatctttctattcattatagcactttgtttgatgaagaatgttgatgtttgtgctacactta |
23692950 |
T |
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| Q |
137 |
ttccaaatggtaaagtaaatatccaaattgggatcatgttgatcataagcttcatttcttcaactctagt |
206 |
Q |
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|||||||||||| ||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||| |||| |
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| T |
23692951 |
ttccaaatggtatagtgaatacccaaattggtatcatattgattataagcttcatttcttcaactgtagt |
23693020 |
T |
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