View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5390-Insertion-2 (Length: 714)
Name: NF5390-Insertion-2
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Original strand, 44566986 - 44567429
Alignment:
| Q |
8 |
gtaggttggcacatatcacacttcttcacttttagcagcatctggacctccaactcctggggttctaagtcgcggtattggtctagaaggtttttctagt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44566986 |
gtaggttggcacatatcacacttcttcacttttagcagcatctggacctccaactcctggggttcttagtcgcggtattggtctagaaggtttttctagt |
44567085 |
T |
|
| Q |
108 |
ttgttggctggtctctggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567086 |
ttgttggctggtctctggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttc |
44567185 |
T |
|
| Q |
208 |
aattgggtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatttgcatctacctttgttactccatattgtg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567186 |
aattgggtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatttgcatctacctttgttactccatattgtg |
44567285 |
T |
|
| Q |
308 |
acgaacagccgttcaacagaattagaaacattagctaccttgatacacccttgagcttatttg--tttgtgttctttatttagtttatttgttaatcttg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
44567286 |
acgaacagccgttcaacagaattagaaacattagctaccttgatacacccttgagcttatttgtttttttgttctttatttagtttatttgttaatcttg |
44567385 |
T |
|
| Q |
406 |
aaggacgccttttccttcctcctagtagtacttcattgcttcat |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567386 |
aaggacgccttttccttcctcctagtagtacttcattgcttcat |
44567429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 514 - 714
Target Start/End: Original strand, 44567494 - 44567694
Alignment:
| Q |
514 |
atatcacaaatataccatgtctaactttacttttactatataacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcc |
613 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567494 |
atatcacaaatataccatgtctaattttacttttactatataacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcc |
44567593 |
T |
|
| Q |
614 |
tctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcatt |
713 |
Q |
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| T |
44567594 |
tctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcatt |
44567693 |
T |
|
| Q |
714 |
g |
714 |
Q |
| |
|
| |
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|
| T |
44567694 |
g |
44567694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 8 - 332
Target Start/End: Complemental strand, 36031757 - 36031439
Alignment:
| Q |
8 |
gtaggttggcacatatcacacttcttcacttttagcagcatctggacctccaactcctggggttctaagtcgcggtattggtctagaaggtttttctagt |
107 |
Q |
| |
|
|||||||||| ||||||| | |||||| | |||| ||||||| |||||||||||||||||||||| |||||||| |||||||| |||||| |||||||| |
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| T |
36031757 |
gtaggttggctcatatcatgcatcttcattattagtagcatctagacctccaactcctggggttcttagtcgcggaattggtctggaaggtctttctagt |
36031658 |
T |
|
| Q |
108 |
ttgttggctggtctctggggtactggaatgggatcaacaactctaaccgaaaatgttcacacaattgctgggacaaaaatgggaagccgcagaccagttc |
207 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||| || ||| |||| ||||||||||| |||||||||| ||| |||||||||||||||||| |||||| |
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| T |
36031657 |
gttttggctggtctctggggtactggaactggatctaccactttaactgaaaatgttcatacaattgctgtgactaaaatgggaagccgcagagcagttc |
36031558 |
T |
|
| Q |
208 |
aattgggtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatttgcatctacctttgttactccatattgtg |
307 |
Q |
| |
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|||||||||| ||| |||| ||||| |||||||| | ||||||||||||||||| ||||||| | |||||| |||||||| | ||||| ||||| |
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| T |
36031557 |
aattgggtgcatgtattctgatagtgttatctctcgtgggtaagtatctattatc---ctgttgt---acttgcatttacctttgacagtccatcttgtg |
36031464 |
T |
|
| Q |
308 |
acgaacagccgttcaacagaattag |
332 |
Q |
| |
|
| ||| | ||||| ||||||||||| |
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|
| T |
36031463 |
atgaataaccgttgaacagaattag |
36031439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 528 - 714
Target Start/End: Complemental strand, 36029299 - 36029112
Alignment:
| Q |
528 |
ccatgtctaactttacttttactatat-aacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtg |
626 |
Q |
| |
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|||||| ||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
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| T |
36029299 |
ccatgtttaattttgcttttactatattaacagggaaggttggagggttcattgcttcaattcctggagtcatggttgctggtctcctctgctttatgtg |
36029200 |
T |
|
| Q |
627 |
ggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcattg |
714 |
Q |
| |
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||| |||||||||||||| |||||||||||||||||||||| |||| | ||||||||||| |||||||| ||| ||||| | |||||| |
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| T |
36029199 |
ggcaatgcttacagcattgggcttgtccaatctacgctatagtgaggctggaagctctcgcaatatcataataattggattatcattg |
36029112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 568 - 704
Target Start/End: Original strand, 20126433 - 20126569
Alignment:
| Q |
568 |
ggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctata |
667 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||| | |||||||| ||||||||||| | |
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| T |
20126433 |
ggagggttcattgcttcaattcctgaagttatggttgctggtctcctctgcttcatgtgggcaatgctcacagcttggggcttgtcaaatctacgctaca |
20126532 |
T |
|
| Q |
668 |
ctgagaccggaagctctcgaaatatcattatagttgg |
704 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||| |
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| T |
20126533 |
gtgaggccggaagctctcgcaatatcatcatagttgg |
20126569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 20124129 - 20124273
Alignment:
| Q |
52 |
gacctccaactcctggggttctaagtcgcggtattggtctagaaggtttttctagtttgttggctggtctctggggtactggaatgggatcaacaactct |
151 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || |||||| | |||||| ||| |||| | ||||||||||||||||| ||||||| ||||| |||||| | |
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|
| T |
20124129 |
gacctccaactcctggagttcttagtcgaggaattggtttggaaggtctttgtagtgtcttggctggtctctggggaactggaactggatctacaacttt |
20124228 |
T |
|
| Q |
152 |
aaccgaaaatgttcacacaattgctgggacaaaaatgggaagccg |
196 |
Q |
| |
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||||||||||||||| |||||||| | ||| |||||||||||||| |
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| T |
20124229 |
aaccgaaaatgttcatacaattgccgtgactaaaatgggaagccg |
20124273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 16069436 - 16069361
Alignment:
| Q |
203 |
agttcaattgggtgcgtgtcttctcatagtattatctctatttggtaagtatctattatcattctgttgttgcatt |
278 |
Q |
| |
|
||||||||| ||||| |||||||| | |||||||||||| |||| |||||||||||||||||| ||||||| |||| |
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|
| T |
16069436 |
agttcaattaggtgcatgtcttctgacagtattatctctctttgctaagtatctattatcattttgttgtttcatt |
16069361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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