View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5390-Insertion-3 (Length: 650)

Name: NF5390-Insertion-3
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5390-Insertion-3
NF5390-Insertion-3
[»] chr2 (8 HSPs)
chr2 (8-650)||(10605325-10605965)
chr2 (188-251)||(35928265-35928328)
chr2 (190-232)||(12749982-12750024)
chr2 (186-232)||(37449408-37449454)
chr2 (190-232)||(42173938-42173980)
chr2 (190-224)||(44460357-44460391)
chr2 (191-224)||(10547213-10547246)
chr2 (182-222)||(36300410-36300450)
[»] chr5 (8 HSPs)
chr5 (166-232)||(875714-875779)
chr5 (190-232)||(38346880-38346922)
chr5 (184-224)||(4787938-4787978)
chr5 (169-229)||(40990978-40991038)
chr5 (190-225)||(41399571-41399606)
chr5 (144-225)||(34156681-34156762)
chr5 (165-222)||(40213865-40213922)
chr5 (190-258)||(41894409-41894477)
[»] chr6 (7 HSPs)
chr6 (187-232)||(31694720-31694765)
chr6 (165-232)||(9074112-9074179)
chr6 (190-232)||(21869881-21869923)
chr6 (182-232)||(26373101-26373151)
chr6 (190-232)||(18270616-18270658)
chr6 (188-232)||(9163774-9163818)
chr6 (180-232)||(33735426-33735478)
[»] chr7 (9 HSPs)
chr7 (190-232)||(23218621-23218663)
chr7 (123-232)||(30900046-30900155)
chr7 (165-232)||(30477955-30478022)
chr7 (182-265)||(38622872-38622955)
chr7 (182-232)||(2898910-2898960)
chr7 (188-232)||(1109348-1109392)
chr7 (168-232)||(2219504-2219568)
chr7 (191-251)||(25314032-25314092)
chr7 (182-222)||(40869547-40869587)
[»] chr4 (6 HSPs)
chr4 (182-232)||(34581597-34581647)
chr4 (191-232)||(2843583-2843624)
chr4 (182-230)||(18968295-18968343)
chr4 (182-220)||(20989522-20989560)
chr4 (188-226)||(32677007-32677045)
chr4 (182-222)||(47789191-47789231)
[»] chr1 (6 HSPs)
chr1 (190-252)||(15955891-15955953)
chr1 (152-273)||(43391497-43391618)
chr1 (165-217)||(6025946-6025998)
chr1 (184-223)||(17472847-17472886)
chr1 (182-223)||(3335396-3335437)
chr1 (182-222)||(1118936-1118976)
[»] scaffold0913 (1 HSPs)
scaffold0913 (183-232)||(1272-1321)
[»] scaffold0898 (1 HSPs)
scaffold0898 (183-232)||(4280-4329)
[»] chr8 (2 HSPs)
chr8 (184-229)||(22807100-22807145)
chr8 (186-226)||(13851005-13851045)
[»] chr3 (5 HSPs)
chr3 (182-223)||(8788967-8789008)
chr3 (166-222)||(24830165-24830221)
chr3 (186-256)||(51295676-51295746)
chr3 (190-232)||(54842197-54842239)
chr3 (186-223)||(2990979-2991016)
[»] scaffold0041 (1 HSPs)
scaffold0041 (182-222)||(96695-96735)


Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 8 - 650
Target Start/End: Original strand, 10605325 - 10605965
Alignment:
Q  8 ggttgttcactttatttttaaaagatatatgcgagcgcacacacaaggcctcatcatttggcttaattaataatccgttaaatgatggttacatttgaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  10605325 ggttgttcactttatttttaaaagatatatgcgagcgcacacacaaggtctcatcatttggcttaactaataatccgttaaatgacggttacatttgaag 10605424  T
Q  108 cagtgctttaatcgtagattgcagaaaccagcggtctgttcagattctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttg 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10605425 cagtgctttaatcgtagattgcagaaaacagcggtctgttcagattctgctatgcaccagtgctataacaccgatatagccactatttgacaagattttg 10605524  T
Q  208 tattaaatagtgtatcacagaacaactacgaattgatcaaattctgctaggttatagcactgtagcgccgctatttaacaccatttatttgaagtccttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10605525 tattaaatagtgtatcacagaacaactacgaattgatcaaattctgctaggttatagcactgtagcgccgccatttaacaccatttatttgaagtccttt 10605624  T
Q  308 atacttcctttgttgatctttatattttgagtacaatgttaccaatacttgtttttgcagtcttgtatatttttctgctaatgtactgataccttgtgct 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10605625 atacttcctttgttgatctttatattttgagtacaatgttaccaatacttgtttttgcagtcatgtatatttttctgctaatgtactgataccttgtgct 10605724  T
Q  408 atagtaactaagtcaatttccatggcagatctttgaattctaatagatttagtggaagaattccaccttctatcggtaatctgtcaaatattaattggct 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10605725 atagtaactaagtcaatttccatggcagatctttgaattctaatagatttagtggaagaattccaccttctattggtaatctgtcaaatattaattggct 10605824  T
Q  508 agacttagcagaaaaccagcttgagggtcccatcccagtatctaatggaactactcctggtcttgatatgcttcacaaaacaaagcacttgtatgtgatg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605825 agacttagcagaaaaccagcttgagggtcccatcccagtatctaatggaactactcctggtcttgatatgcttcacaaaacaaagcacttgtatgtgatg 10605924  T
Q  608 ttaacnnnnnnnnnncttttgataatatttacagtaatttgct 650  Q
    |||||          ||||||||||||||||||||||||||||    
T  10605925 ttaac--ttttttttcttttgataatatttacagtaatttgct 10605965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 35928328 - 35928265
Alignment:
Q  188 cactatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattc 251  Q
    |||||||||||||||||||||| | || |||||||||| ||||||| || | || |||||||||    
T  35928328 cactatttgacaacattttgtactcaacagtgtatcacggaacaacaacaatttaatcaaattc 35928265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 12750024 - 12749982
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||||||||||||||||| |||||||||||  |||||||||    
T  12750024 ctatttgacaacattttgtactaaatagtgtaatacagaacaa 12749982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 37449454 - 37449408
Alignment:
Q  186 gccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||||||||||||||||||||  | ||||||||||| |||||||    
T  37449454 gccactatttgacaacattttgtacgagatagtgtatcatagaacaa 37449408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 42173938 - 42173980
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  42173938 ctatttgacaacaatttgtattaaataacgtatcacagaacaa 42173980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 44460391 - 44460357
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatca 224  Q
    |||||||||||||||||||| ||||||||||||||    
T  44460391 ctatttgacaacattttgtactaaatagtgtatca 44460357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 10547213 - 10547246
Alignment:
Q  191 tatttgacaacattttgtattaaatagtgtatca 224  Q
    ||||||||||||||||||| ||||||||||||||    
T  10547213 tatttgacaacattttgtactaaatagtgtatca 10547246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 36300450 - 36300410
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtat 222  Q
    |||| ||||||||||||||||||||||| ||||||| ||||    
T  36300450 tatatccactatttgacaacattttgtactaaatagcgtat 36300410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 875779 - 875714
Alignment:
Q  166 agtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||||||||||  ||||||| |||||||||||||||||| | ||||||||||||||| ||||||    
T  875779 agtgctataacaccactatagccgctatttgacaacattttg-actaaatagtgtatcacggaacaa 875714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 38346922 - 38346880
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  38346922 ctatttgacaacattttgtagtaaatagtgtatcacagaacaa 38346880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 4787978 - 4787938
Alignment:
Q  184 tagccactatttgacaacattttgtattaaatagtgtatca 224  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  4787978 tagccactatttgacaacattttgtactaaatagtgtatca 4787938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 40991038 - 40990978
Alignment:
Q  169 gctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaa 229  Q
    |||||| ||||  |||| ||||||||||||||||||||||| ||||||| || ||||||||    
T  40991038 gctatagcaccactatacccactatttgacaacattttgtactaaatagcgtgtcacagaa 40990978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 41399571 - 41399606
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcac 225  Q
    |||||||||||||||||||| |||||||||||||||    
T  41399571 ctatttgacaacattttgtactaaatagtgtatcac 41399606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 34156762 - 34156681
Alignment:
Q  144 tgttcagattctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcac 225  Q
    |||||| |||||| |||||| |||||||||| |||  ||||||   |||||| ||||||||||| | ||||||| |||||||    
T  34156762 tgttcaaattctgctatgcaacagtgctatagcacaaatatagttgctatttaacaacattttgcactaaatagcgtatcac 34156681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 40213865 - 40213922
Alignment:
Q  165 cagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtat 222  Q
    |||||||||| |||| ||||||| || |||||||||||||||||| || |||| ||||    
T  40213865 cagtgctatagcaccaatatagctaccatttgacaacattttgtactacatagcgtat 40213922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 41894477 - 41894409
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattctgctagg 258  Q
    ||||||||||||| |||||| ||||||| ||||  ||||||||  || | ||| |||||||||||||||    
T  41894477 ctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaattctgctagg 41894409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 31694720 - 31694765
Alignment:
Q  187 ccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  31694720 ccactatttgaaaacattttgtactaaatagtgtatcacagaacaa 31694765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 9074112 - 9074179
Alignment:
Q  165 cagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||||||| | ||| ||||||| |||||||| ||||||||||| ||||||||||||| || |||||    
T  9074112 cagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaa 9074179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 21869923 - 21869881
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||||||||||||||||| ||||||||||||||| ||||||    
T  21869923 ctatttgacaacattttgtactaaatagtgtatcacggaacaa 21869881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 26373151 - 26373101
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||| |||||||||||||||| |||||| ||||||| ||||||||||||||    
T  26373151 tataaccactatttgacaacactttgtactaaatagcgtatcacagaacaa 26373101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 18270616 - 18270658
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||| |||| |||||||||||||||||||||| ||||||||    
T  18270616 ctatttcacaatattttgtattaaatagtgtatcgcagaacaa 18270658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 9163818 - 9163774
Alignment:
Q  188 cactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||||||||||||||||||| ||||||| |||| || ||||||    
T  9163818 cactatttgacaacattttgtactaaatagcgtataacggaacaa 9163774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 33735426 - 33735478
Alignment:
Q  180 gatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||| | |||||||||||||||||||| |||||||  |||||| ||||||    
T  33735426 gatatagtcgctatttgacaacattttgtactaaatagcatatcacggaacaa 33735478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 23218621 - 23218663
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||||||||||||||||||||||||| |||||| |||||||    
T  23218621 ctatttgacaacattttgtattaaatagcgtatcatagaacaa 23218663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 30900046 - 30900155
Alignment:
Q  123 agattgcagaaaccagcggtctgttcagattctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtat 222  Q
    ||||||||||||  || ||| || ||| |||| | |||| | |||| ||||| |||||  ||||||||||||| |||| |||||||| ||||||||||||    
T  30900046 agattgcagaaaatagtggtttgctcaaattccgctatgtaacagtactatagcaccgcgatagccactatttcacaatattttgtactaaatagtgtat 30900145  T
Q  223 cacagaacaa 232  Q
    | | ||||||    
T  30900146 cgctgaacaa 30900155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 30478022 - 30477955
Alignment:
Q  165 cagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||||||   ||||||||||||||||||||||||| ||||||  ||||| || ||| ||||||||    
T  30478022 cagtgctatattgccgatatagccactatttgacaacactttgtacaaaataatgcatcgcagaacaa 30477955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 38622872 - 38622955
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattctgctaggttatagc 265  Q
    ||||||| |||||||||||||||||||  ||||||||||||||  ||||||   ||| ||  ||||||||||||| | ||||||    
T  38622872 tatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgctacgctatagc 38622955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 2898960 - 2898910
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||||||||||| |||| |||||| ||||||||| ||||||| ||||||    
T  2898960 tatagccactatttcacaatattttgcattaaatagcgtatcacggaacaa 2898910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 1109348 - 1109392
Alignment:
Q  188 cactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||| |||||||||||||||| ||||||||||||| | ||||||    
T  1109348 cactacttgacaacattttgtactaaatagtgtatcgcggaacaa 1109392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 2219504 - 2219568
Alignment:
Q  168 tgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||| ||||| |||| || ||||||||||| |||||||| |||||||  ||||| |||||||    
T  2219504 tgctatagcaccgttataaccgctatttgacaatattttgtactaaatagcatatcagagaacaa 2219568  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 25314032 - 25314092
Alignment:
Q  191 tatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattc 251  Q
    ||||| |||||| ||||||  |||||||||||||||||||||  |||| ||| ||||||||    
T  25314032 tatttaacaacactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattc 25314092  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 40869547 - 40869587
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtat 222  Q
    ||||||| |||||||||||||||||||| |||||| |||||    
T  40869547 tatagccgctatttgacaacattttgtactaaatactgtat 40869587  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 34581647 - 34581597
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||| ||||||    
T  34581647 tatagccgctatttgacaacattttgtactaaatagcgtatcacggaacaa 34581597  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 2843583 - 2843624
Alignment:
Q  191 tatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  2843583 tatttgacaacattttgtactaaatagtgtatcgcagaacaa 2843624  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 18968343 - 18968295
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtatcacagaac 230  Q
    ||||||| |||||||||||||||||||| ||||||||||| | ||||||    
T  18968343 tatagccgctatttgacaacattttgtactaaatagtgtaactcagaac 18968295  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 20989560 - 20989522
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgt 220  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  20989560 tatagccgctatttgacaacattttgtactaaatagtgt 20989522  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 32677045 - 32677007
Alignment:
Q  188 cactatttgacaacattttgtattaaatagtgtatcaca 226  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  32677045 cactatttgacaatattttgtagtaaatagtgtatcaca 32677007  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 47789231 - 47789191
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtat 222  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  47789231 tatagccactatttgacaacagtttgtactaaatagagtat 47789191  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 15955953 - 15955891
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattct 252  Q
    |||||||||||||||||||  |||||||||||||||| |||||  |||| ||| |||||||||    
T  15955953 ctatttgacaacattttgtcctaaatagtgtatcacataacaagaacgatttgttcaaattct 15955891  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 152 - 273
Target Start/End: Original strand, 43391497 - 43391618
Alignment:
Q  152 ttctgatatgcaccagtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattc 251  Q
    ||||| |||||| |||||||||| ||  | ||||||| | |||||||||||||||||| ||||||||| |||   ||||||   ||| ||| ||||||||    
T  43391497 ttctgctatgcaacagtgctatagcaatgctatagccgccatttgacaacattttgtactaaatagtgcatcggggaacaatagcgatttgttcaaattc 43391596  T
Q  252 tgctaggttatagcactgtagc 273  Q
    ||| | | ||||||| ||||||    
T  43391597 tgccatgctatagcattgtagc 43391618  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 6025946 - 6025998
Alignment:
Q  165 cagtgctataacaccgatatagccactatttgacaacattttgtattaaatag 217  Q
    |||||||||| | | | |||||||||||||||||||||||||||| |||||||    
T  6025946 cagtgctatagcgctgctatagccactatttgacaacattttgtactaaatag 6025998  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 17472886 - 17472847
Alignment:
Q  184 tagccactatttgacaacattttgtattaaatagtgtatc 223  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  17472886 tagccactatttgactacattttgtattaaatagcgtatc 17472847  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 3335437 - 3335396
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtatc 223  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||    
T  3335437 tatagccactatttgaccacactttgtattaaatattgtatc 3335396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 1118976 - 1118936
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtat 222  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  1118976 tatagccactatttgacaacactttgtactaaatagagtat 1118936  T

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Target: scaffold0913 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 1272 - 1321
Alignment:
Q  183 atagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||| ||||||||||||| |||||| ||||||||||||||| ||||||    
T  1272 atagcctctatttgacaacactttgtactaaatagtgtatcacggaacaa 1321  T

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Target: scaffold0898 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 4329 - 4280
Alignment:
Q  183 atagccactatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    |||||| ||||||||||||| |||||| ||||||||||||||| ||||||    
T  4329 atagcctctatttgacaacactttgtactaaatagtgtatcacggaacaa 4280  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 22807100 - 22807145
Alignment:
Q  184 tagccactatttgacaacattttgtattaaatagtgtatcacagaa 229  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||    
T  22807100 tagccattatttgacaacatttcgtactaaatagtgtatcacagaa 22807145  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 13851005 - 13851045
Alignment:
Q  186 gccactatttgacaacattttgtattaaatagtgtatcaca 226  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  13851005 gccactatttgataacattttgtactaaatagtatatcaca 13851045  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 8788967 - 8789008
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtatc 223  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  8788967 tatagcctctatttgacaacattttgtatttaatagtgtatc 8789008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 24830221 - 24830165
Alignment:
Q  166 agtgctataacaccgatatagccactatttgacaacattttgtattaaatagtgtat 222  Q
    ||||||||| | |||||||||||  |||||||||||||||| || ||||||||||||    
T  24830221 agtgctatagcgccgatatagcctttatttgacaacattttatactaaatagtgtat 24830165  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 51295746 - 51295676
Alignment:
Q  186 gccactatttgacaacattttgtattaaatagtgtatcacagaacaactacgaattgatcaaattctgcta 256  Q
    ||||||| | |||||||||||||| ||||||| |||||||  |||||  |||| ||||||||| |||||||    
T  51295746 gccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaactctgcta 51295676  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 54842197 - 54842239
Alignment:
Q  190 ctatttgacaacattttgtattaaatagtgtatcacagaacaa 232  Q
    ||||||||||||||||| || ||||||| ||||||||||||||    
T  54842197 ctatttgacaacattttatactaaatagcgtatcacagaacaa 54842239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 2990979 - 2991016
Alignment:
Q  186 gccactatttgacaacattttgtattaaatagtgtatc 223  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  2990979 gccactatttgacaacattttgtactaaatagcgtatc 2991016  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 96735 - 96695
Alignment:
Q  182 tatagccactatttgacaacattttgtattaaatagtgtat 222  Q
    ||||||| |||||||||||||||||||| |||||| |||||    
T  96735 tatagccgctatttgacaacattttgtactaaatactgtat 96695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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