View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5390-Insertion-4 (Length: 490)
Name: NF5390-Insertion-4
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 170 - 420
Target Start/End: Complemental strand, 30078609 - 30078359
Alignment:
| Q |
170 |
ttgactacttgtattgactctaaattccctaccaaactcaagatgggaaaagttgaaaacaaaacaaaattccaactcattcttnnnnnnnnnnnnccac |
269 |
Q |
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| T |
30078609 |
ttgactacttgtattgactctaaattctctaccaaactcaagatggggaaagttgaaaacaaaacaaaattccaactcattctttctctctctctcccac |
30078510 |
T |
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| Q |
270 |
aaaatttaatgcacactaactccctcattgagatttgaaacttgaatctctccacaaaaatccagtattaaatgctacagatgaaactctcacccaccct |
369 |
Q |
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| T |
30078509 |
aaaatttaatgcacactaactccctcattgagatttgaaacttgaatctctccacaaaaatccagtattaaatgctacagatgaaactctcacccaccct |
30078410 |
T |
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| Q |
370 |
ttacccctnnnnnnnnnnntgccatcctaacccccctaagtttctccctca |
420 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
30078409 |
ttacccctaaaaaaaaaaatgccatcctaacccccctaagtttctccctca |
30078359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 30078763 - 30078711
Alignment:
| Q |
3 |
caacattaagcacctccaatgcacgcatactattatccccaatgtttatctag |
55 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30078763 |
caaccttaagcacctccaatgcacacatactattatccccaatgtttatctag |
30078711 |
T |
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