View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5390-Insertion-5 (Length: 255)

Name: NF5390-Insertion-5
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5390-Insertion-5
NF5390-Insertion-5
[»] chr5 (14 HSPs)
chr5 (8-255)||(37430291-37430538)
chr5 (73-255)||(37698327-37698509)
chr5 (73-232)||(37391385-37391544)
chr5 (129-242)||(37595877-37595990)
chr5 (73-242)||(37641428-37641597)
chr5 (73-242)||(37713171-37713340)
chr5 (134-249)||(37704208-37704323)
chr5 (57-214)||(37411734-37411891)
chr5 (140-244)||(37825458-37825562)
chr5 (73-241)||(37534648-37534816)
chr5 (134-215)||(37441518-37441599)
chr5 (73-242)||(37437248-37437417)
chr5 (137-232)||(37380831-37380926)
chr5 (140-222)||(37399314-37399396)
[»] chr4 (2 HSPs)
chr4 (137-255)||(24216245-24216363)
chr4 (134-241)||(16841384-16841491)
[»] chr3 (1 HSPs)
chr3 (137-232)||(14554616-14554711)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 37430538 - 37430291
Alignment:
Q  8 ataacctctatagatataggctaaaataatcaaatccaaaatcctaaacaagagagtataatttcctctaaatggggtccttttgttttctatttcctta 107  Q
    ||||| |||||||||| ||||||||||||||||||  |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37430538 ataacatctatagatagaggctaaaataatcaaataaaaaatcctcaagaagagagtatagtttcctctaaatggggtccttttgttttctatttcctta 37430439  T
Q  108 tcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattc 207  Q
    |||||||||||||        |||||||||||| |||| |||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||    
T  37430438 tcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaagcatcatgacagttctgccttgttacaattc 37430339  T
Q  208 aagaactcattttttatcaacacttaatctcaacctggtttttggtct 255  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  37430338 aagaattcattttttatcaacacttcatctcaacctggtttttggtct 37430291  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 73 - 255
Target Start/End: Complemental strand, 37698509 - 37698327
Alignment:
Q  73 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 172  Q
    ||||||||||||||||||| | ||||||| |||||| |||||||||||        |||| || |||||||||||||||||||||| ||| ||||| | |    
T  37698509 ctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattat 37698410  T
Q  173 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacctggtttttggtct 255  Q
     ||||||| |||||||||||||||||||||||||||| ||||||||||   | |||||||  |||||||||| | ||||||||    
T  37698409 gcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtct 37698327  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 37391385 - 37391544
Alignment:
Q  73 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 172  Q
    ||||||||||||||||| | | || |||| |||||| || ||||||||        |||| || |||||||||||||||||||||||||  ||||| |||    
T  37391385 ctctaaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgt 37391484  T
Q  173 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 232  Q
     ||||| | |||| || ||||||||| |||||||||| |||||||||||| |||||||||    
T  37391485 gcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacactt 37391544  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 37595990 - 37595877
Alignment:
Q  129 gttgatgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaac 228  Q
    |||| ||||||||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | |||||    
T  37595990 gttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaac 37595891  T
Q  229 acttaatctcaacc 242  Q
    |||| |||||||||    
T  37595890 acttcatctcaacc 37595877  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 242
Target Start/End: Complemental strand, 37641597 - 37641428
Alignment:
Q  73 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 172  Q
    ||||||||||| ||||||| | ||| ||| |||||| || ||||||||        |||| || || ||||||||||||||||||| || |||||| |||    
T  37641597 ctctaaatgggatccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgt 37641498  T
Q  173 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 242  Q
     ||||||  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| ||||    
T  37641497 gcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaacc 37641428  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 242
Target Start/End: Complemental strand, 37713340 - 37713171
Alignment:
Q  73 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 172  Q
    ||||||||||| ||||||| | ||| ||| |||||| || ||||||||        |||| || |||||||||||||||||||| | || |||||| |||    
T  37713340 ctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttctcactgt 37713241  T
Q  173 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 242  Q
     |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||||||||    
T  37713240 gcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaacc 37713171  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 37704323 - 37704208
Alignment:
Q  134 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactta 233  Q
    ||||||||||||||||||||||||| || |||||| ||| || |||  |||| || || |||||||||||||||||  ||||||||| | |||||||||     
T  37704323 tgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttc 37704224  T
Q  234 atctcaacctggtttt 249  Q
    |||| |||| ||||||    
T  37704223 atctaaacccggtttt 37704208  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 37411734 - 37411891
Alignment:
Q  57 aagagagtataatttcctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcc 156  Q
    |||||||| ||| || |||||||||||||||| || | |||||||  | ||| || ||||||||        |||| ||||| |||||||||||||||||    
T  37411734 aagagagtttaagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcc 37411833  T
Q  157 tatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaact 214  Q
    || || |||||| | | |||| || ||||||| | |||||||||||||||||||||||    
T  37411834 tacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaact 37411891  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 37825562 - 37825458
Alignment:
Q  140 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctca 239  Q
    ||||||||||||||||||| || |||||| ||| |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||||||||| |||| |    
T  37825562 ttactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaa 37825463  T
Q  240 acctg 244  Q
    |||||    
T  37825462 acctg 37825458  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 37534816 - 37534648
Alignment:
Q  73 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 172  Q
    ||||||||||| ||||||| | ||| ||| |||||| || ||||||||        |||| || || ||||||||||||||||||| || |||||| |||    
T  37534816 ctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgt 37534717  T
Q  173 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaac 241  Q
     |||| |  ||||||  |||||||||||||||||||| ||||| |||| | ||| ||||| ||||||||    
T  37534716 gcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctcaac 37534648  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 37441599 - 37441518
Alignment:
Q  134 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactc 215  Q
    |||||||||||||||||||||||||||| |||||| |||  ||| |  ||||||  |||||||||||||||||||| |||||    
T  37441599 tgctgcttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc 37441518  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 242
Target Start/End: Complemental strand, 37437417 - 37437248
Alignment:
Q  73 ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt 172  Q
    ||||||||||||||||||| | |||| || |||| | ||||| |||||        |||| || |||||||||| |||||| || | || |||||| | |    
T  37437417 ctctaaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattat 37437318  T
Q  173 ccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatctcaacc 242  Q
     ||||||| ||||||  |||||||| ||||||||||| ||||| ||| || ||||||||| |||||||||    
T  37437317 gcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctcaacc 37437248  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 37380831 - 37380926
Alignment:
Q  137 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 232  Q
    |||||||||||||||||||| | || |||||| ||| ||||||  |||| |  |||||||||||||| ||||| |||||||||| | |||||||||    
T  37380831 tgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactcattttctttcaacactt 37380926  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 37399314 - 37399396
Alignment:
Q  140 ttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcatttttt 222  Q
    |||||||||||||||| || || |||||| | | ||||||| ||||||  |||||||||||||||||||| || |||||||||    
T  37399314 ttactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattcatttttt 37399396  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 255
Target Start/End: Original strand, 24216245 - 24216363
Alignment:
Q  137 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacacttaatc 236  Q
    ||||||||||||||||||| || || | |||| | | ||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||| |||    
T  24216245 tgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 24216344  T
Q  237 tcaacctggtttttggtct 255  Q
    | |||| | | ||||||||    
T  24216345 tgaacccgatatttggtct 24216363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 16841384 - 16841491
Alignment:
Q  134 tgctgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactta 233  Q
    ||||||||||||| ||||||||  | || || ||| | | ||||||  ||||||| ||||| |||||||| ||||| |||||||||| | |||||||||     
T  16841384 tgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttc 16841483  T
Q  234 atctcaac 241  Q
    ||||||||    
T  16841484 atctcaac 16841491  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 14554711 - 14554616
Alignment:
Q  137 tgcttactcattttacttcctatacattctcaatgtccaaccatgatgacagttctgccttgttacaattcaagaactcattttttatcaacactt 232  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||  ||||||  |||||||||||||||||||| ||||| |||| | |||||||||    
T  14554711 tgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacactt 14554616  T

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