View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5390_high_1 (Length: 690)

Name: NF5390_high_1
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5390_high_1
NF5390_high_1
[»] chr5 (1 HSPs)
chr5 (1-690)||(9745754-9746443)


Alignment Details
Target: chr5 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 1 - 690
Target Start/End: Original strand, 9745754 - 9746443
Alignment:
Q  1 ggaaggagttcagtaagttgggaatcttctaactttaattcttctagccatattgaattcaattcatttcacaaagttaaagatgacggcgatgatgatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  9745754 ggaaggagttcagtaagttgggaatcttctaactttaattcttctagccatattgaattcgactcatttcacaaagttaaagatgacggcgatgatgatg 9745853  T
Q  101 gatggagccagagttttggagaacaaaggcgtcgggaacatccacaggaaaaggaacttcagaaattcaagaaagagtttgaagcatatcaagcagcaag 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9745854 gatggagccagagttttggagaacaaaggcgtcgagaacatccacaggaaaaggaacttcagaaattcaagaaagagtttgaagcatatcaagcagcaag 9745953  T
Q  201 gtttcaagaatgttcaaagtttgccgaaatcggcagtgtttccagcagattgatttttcaagagaatcggaacagcgaaaaggttgcacttgcacgtaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9745954 gtttcaagaatgttcaaagtttgccgaaatcggcagtgtttccagcagattgatttttcaagagaatcggaacagcgaaaaggttgcacttgcacataat 9746053  T
Q  301 acaagtatgcaaaggaaaatctttccttcaaagagcagaactctaagtagagattttgaagagtccttaatgatcaaatcttataacagattagatgcat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9746054 acaagtatgcaaaggaaaatctttccttcaaagagcagaactctaagtagagattttgaagagtccttaatgatcaaatcttataacagattagatgcat 9746153  T
Q  401 cttctccaacccggatcgttatcttgaaacctggtcctgattgcatattcaatcatgaagagaactggactagttcaacagggactttaccaggtagaca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9746154 cttctccaacccggatcgttatcttgaaacctggtcctgattgcatattcaatcatgaagagaactggactagttcaacagggactttaccaggtagaca 9746253  T
Q  501 tagtatagaagattttcttgaggaggtgaaagagcgtttgaaatgcgaactgcaaggaaaaactgtcggaaaaggttatgcggtccgaggaagtgatatt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9746254 tagtatagaagattttcttgaggaggtgaaagagcgtttgaaatgcgaactgcaaggaaaaactgtcggaaaaggttatgcggtccgaggaagtgatatt 9746353  T
Q  601 gagacactatgcaataaaaaaccatctgatcctaaacttatcgctcgtcaaatagtaaagcaagtcaaagaaaatgtgacaagagataac 690  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9746354 gagacactacgcaataaaaaaccatctgatcctaaacttatcgctcgtcaaatagtaaagcaagtcaaagaaaatgtgacaagagataac 9746443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University