View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5390_high_6 (Length: 419)

Name: NF5390_high_6
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5390_high_6
NF5390_high_6
[»] scaffold0057 (1 HSPs)
scaffold0057 (10-406)||(40658-41039)
[»] chr2 (11 HSPs)
chr2 (27-377)||(32252300-32252653)
chr2 (44-370)||(35922479-35922795)
chr2 (10-106)||(44586894-44586991)
chr2 (19-110)||(16858356-16858447)
chr2 (277-370)||(16858604-16858698)
chr2 (23-110)||(23656863-23656950)
chr2 (19-74)||(27470647-27470702)
chr2 (269-342)||(23656678-23656751)
chr2 (42-134)||(13361397-13361490)
chr2 (173-268)||(44586731-44586826)
chr2 (27-110)||(24724945-24725028)
[»] chr6 (19 HSPs)
chr6 (10-378)||(9190580-9190945)
chr6 (26-252)||(10907129-10907354)
chr6 (44-370)||(7848077-7848392)
chr6 (44-250)||(14745284-14745488)
chr6 (23-110)||(8404268-8404355)
chr6 (23-110)||(21038200-21038287)
chr6 (44-110)||(22396727-22396793)
chr6 (44-110)||(31473656-31473722)
chr6 (10-106)||(10641811-10641908)
chr6 (47-110)||(31500246-31500309)
chr6 (23-88)||(21083842-21083907)
chr6 (47-110)||(31494860-31494923)
chr6 (277-374)||(10641512-10641612)
chr6 (269-341)||(21083655-21083727)
chr6 (10-67)||(14980814-14980872)
chr6 (10-74)||(14965650-14965715)
chr6 (269-341)||(21038032-21038104)
chr6 (33-106)||(20147244-20147317)
chr6 (33-106)||(22185511-22185584)
[»] chr7 (11 HSPs)
chr7 (23-374)||(13477664-13478011)
chr7 (10-106)||(11655052-11655149)
chr7 (19-110)||(37946307-37946399)
chr7 (277-374)||(22614921-22615021)
chr7 (26-110)||(4532203-4532287)
chr7 (10-93)||(20025511-20025595)
chr7 (277-374)||(11655311-11655411)
chr7 (156-343)||(37946115-37946298)
chr7 (10-67)||(22615224-22615282)
chr7 (193-229)||(11655236-11655272)
chr7 (23-67)||(48376316-48376360)
[»] chr4 (13 HSPs)
chr4 (44-185)||(6821052-6821192)
chr4 (23-110)||(15873377-15873464)
chr4 (156-323)||(6821200-6821357)
chr4 (23-106)||(16285528-16285611)
chr4 (287-373)||(9564155-9564241)
chr4 (10-106)||(11555539-11555636)
chr4 (278-346)||(11936278-11936346)
chr4 (10-72)||(11331364-11331427)
chr4 (287-368)||(15873166-15873247)
chr4 (10-65)||(12136640-12136696)
chr4 (23-106)||(12228569-12228653)
chr4 (193-305)||(11555762-11555866)
chr4 (287-333)||(12136853-12136899)
[»] chr5 (10 HSPs)
chr5 (208-367)||(24757320-24757469)
chr5 (10-106)||(24614922-24615019)
chr5 (10-106)||(24711320-24711417)
chr5 (10-106)||(24744316-24744413)
chr5 (10-106)||(24757082-24757179)
chr5 (208-367)||(24615160-24615309)
chr5 (208-367)||(24711558-24711707)
chr5 (208-367)||(24744554-24744703)
chr5 (193-368)||(13935430-13935597)
chr5 (10-67)||(24832511-24832569)
[»] chr3 (14 HSPs)
chr3 (23-110)||(21974784-21974871)
chr3 (23-110)||(21997215-21997302)
chr3 (10-110)||(13929215-13929316)
chr3 (23-91)||(16363092-16363160)
chr3 (23-110)||(22159359-22159445)
chr3 (10-67)||(4713348-4713406)
chr3 (10-67)||(14482096-14482154)
chr3 (269-342)||(16362890-16362963)
chr3 (269-342)||(21974983-21975056)
chr3 (269-342)||(21997414-21997487)
chr3 (287-338)||(22159558-22159609)
chr3 (10-67)||(14055576-14055634)
chr3 (10-67)||(16614015-16614073)
chr3 (269-341)||(13927154-13927226)
[»] scaffold1001 (2 HSPs)
scaffold1001 (23-96)||(981-1054)
scaffold1001 (277-374)||(1226-1326)
[»] scaffold0092 (1 HSPs)
scaffold0092 (23-93)||(20110-20180)
[»] scaffold0385 (2 HSPs)
scaffold0385 (23-91)||(13774-13842)
scaffold0385 (269-342)||(13972-14045)
[»] scaffold0145 (1 HSPs)
scaffold0145 (23-106)||(12105-12188)
[»] chr8 (1 HSPs)
chr8 (23-67)||(23658102-23658146)
[»] scaffold0601 (1 HSPs)
scaffold0601 (10-106)||(5345-5442)
[»] scaffold0737 (1 HSPs)
scaffold0737 (287-342)||(3930-3985)
[»] scaffold0239 (1 HSPs)
scaffold0239 (10-67)||(21690-21748)
[»] scaffold0218 (1 HSPs)
scaffold0218 (10-67)||(13887-13945)
[»] scaffold0063 (1 HSPs)
scaffold0063 (10-67)||(28810-28868)
[»] scaffold0003 (1 HSPs)
scaffold0003 (10-67)||(130298-130356)
[»] chr1 (2 HSPs)
chr1 (10-67)||(13882818-13882876)
chr1 (269-323)||(15541198-15541252)


Alignment Details
Target: scaffold0057 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 406
Target Start/End: Original strand, 40658 - 41039
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttc 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || |||||||    
T  40658 acatcatcatatacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctacttaccattttgctagagttatattactggacttttc 40757  T
Q  109 tcccacatagttgctagaggtatgtt-ttgaacttttctcccacattattgtcagaagtatggtgctggacttttctcccacatcatgcaagacaccatg 207  Q
     ||||||||||||||||||||||||| ||| ||||||||||||                 || |||||||||||||||||||||||||||||||||||||    
T  40758 acccacatagttgctagaggtatgttattggacttttctccca-----------------tgttgctggacttttctcccacatcatgcaagacaccatg 40840  T
Q  208 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 307  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40841 ctctagactctatatgaacacaatgaaatatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 40940  T
Q  308 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcatagataaacattgtttcccctctattttattttattattc 406  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40941 ctctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcatagataaacattgtttcccctctattttattttattattc 41039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 27 - 377
Target Start/End: Complemental strand, 32252653 - 32252300
Alignment:
Q  27 atatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctcccacatagttgctaga 126  Q
    ||||| |||||| |||||||||||||| ||||||||||||| ||||||||||||||  ||||||||||||| || ||||||||||||||||||| | |||    
T  32252653 atatggactctcttaacgacctatatgtatgtggtaccacacctactcaccatttttgcagagttatattactggacttttctcccacatagtttcgaga 32252554  T
Q  127 ggt--atgttt-tgaacttttctcccacattattgtcagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatg 223  Q
    |||  |||||  || ||||||||||||||| |||| || ||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32252553 ggtgtatgttactggacttttctcccacataattgccaaaagtatgttactagacttttctcccacatcatgcaagacaccatgctctagactctatatg 32252454  T
Q  224 gacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgac 323  Q
    ||||||| ||| || ||| |  |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||    
T  32252453 gacacaaggaaataaattgattaagtattgaacatatacacttaagcacatagtcacataatccacatattaatgcaagactccccctaaaatgcacaac 32252354  T
Q  324 actattgcaaacacacaaaatattaccactctcctcatcatcatagataaacat 377  Q
     || |||||| ||||||||| ||||| ||||| |||||||||||| ||||||||    
T  32252353 tctgttgcaagcacacaaaacattacaactcttctcatcatcatatataaacat 32252300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 44 - 370
Target Start/End: Complemental strand, 35922795 - 35922479
Alignment:
Q  44 gacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctcccacatagttgctagaggtatgtt-ttgaactt 142  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| ||||| || |||||||| | |||||||||| |||| ||||||  || ||||    
T  35922795 gacctatatgaatgtggtaccacatctactcatcgttttgccagagttttattactggacttttct-caacatagttgccagagatatgttactggactt 35922697  T
Q  143 ttctcccacattattgtcagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattc 242  Q
    ||||||||||| |||  |||||||||| | ||||||||||||||||||| |||||||||   ||||||||||||||||||| || ||| ||| || |||     
T  35922696 ttctcccacataatttccagaagtatgttactggacttttctcccacat-atgcaagac-ttatgctctagactctatatgaacgcaaggaattaaattt 35922599  T
Q  243 aacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 342  Q
     ||||||||        ||| | || |||||||||||||||  |||| ||| ||||||||||| | ||||||||||||||| ||| ||||| ||||||||    
T  35922598 gacaagtat--------tacgcatatacacatagtcacatattccacctatgaatgcaagactcctcctaaaatgcacgactctaatgcaagcacacaaa 35922507  T
Q  343 atattaccactctcctcatcatcataga 370  Q
      || ||||||| | |||||||||||||    
T  35922506 tcatcaccactcacatcatcatcataga 35922479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 44586991 - 44586894
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||| ||||||||| ||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| || |||||    
T  44586991 acatcatcatatatatgcatatggactctcctatcaacctatatgaatgtggtaccacacctactcatcattttgccagagttatgttactggacttt 44586894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 16858356 - 16858447
Alignment:
Q  19 atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||  |||||||||| |||||| |||  | |||||||||    
T  16858356 atacatgcatatggactctcctaacgacctatatgaatgtggtaccacacctattcgtcattttgccaaagttatgttatcggacttttctc 16858447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 370
Target Start/End: Original strand, 16858604 - 16858698
Alignment:
Q  277 tcacataacccacatattaatgcaagacttc-ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcataga 370  Q
    |||||||| |||||||||||||||||||| | ||||||||||||| || ||| | ||||||||||||  || || |||||| |||||||||||||    
T  16858604 tcacataatccacatattaatgcaagactcctccctaaaatgcacaactctaatacaaacacacaaatcatcactactctcatcatcatcataga 16858698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 23656950 - 23656863
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||  ||||||| | |||| |||||||||| ||| ||  ||||||||    
T  23656950 atgcatatggactctcctatcaacctatatgaatgtggtaccactcctactcatcgtttttccagagttatgttactgggcttttctc 23656863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 27470702 - 27470647
Alignment:
Q  19 atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactc 74  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||    
T  27470702 atacatgcatatggactctcccaacgatctatatgaatgtggtaccacacctactc 27470647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 23656751 - 23656678
Alignment:
Q  269 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 342  Q
    ||||||| ||| ||||  ||||||||||||||||||| || ||||||||||| || ||| ||||||||||||||    
T  23656751 acacatattcaaataattcacatattaatgcaagactcccactaaaatgcacaactctaatgcaaacacacaaa 23656678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 13361397 - 13361490
Alignment:
Q  42 acgacctatatgaatgtggtaccacatctactc-accattttgccagagttatattagtgtacttttctcccacatag-ttgctagaggtatgtt 134  Q
    |||| ||||||||||||||||||||| ||||||  | |||||||||||||||| ||| || |||||||| | |||||| |||| |||||||||||    
T  13361397 acgatctatatgaatgtggtaccacacctactcttcaattttgccagagttatgttactggacttttct-ctacatagtttgccagaggtatgtt 13361490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 44586826 - 44586731
Alignment:
Q  173 ctggacttttctcccacatca-tgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaa 268  Q
    |||||||||||||  |||||| |||| ||||||||||||||||||||||||| ||  || ||| || |||| |||||||||  |||||| |||||||    
T  44586826 ctggacttttctcg-acatcaatgcacgacaccatgctctagactctatatgaacgtaaagaattaaattcgacaagtattacacatatccacttaa 44586731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 24725028 - 24724945
Alignment:
Q  27 atatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    ||||| |||||||||| |||||| || || ||||||||||  ||||||||||| ||| || |||||| ||| || |||||||||    
T  24725028 atatggactctcctaaagacctacataaacgtggtaccactcctactcaccatattgtcaaagttatgttactggacttttctc 24724945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 9190580 - 9190945
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttc 108  Q
    ||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||| | |||||||| ||||| ||| ||||||||||||| |||||||    
T  9190580 acatcatcatatacatgcatatggactctcctat-gacctatatgaatgtggtaccatagctactcacaatttttccaaagttatattagtggacttttc 9190678  T
Q  109 tcccacatagttgctagaggtatgttt-tgaacttttctcccacattattgtcagaagtatggtgctggacttttctcccacatcatgcaagacaccatg 207  Q
    ||||||||||||| ||||||||||||  || |||| |||||||||| |||| |||||||||| |  || |||||||||||||||||||||||||||||||    
T  9190679 tcccacatagttgttagaggtatgttactggacttctctcccacataattgccagaagtatgttagtgaacttttctcccacatcatgcaagacaccatg 9190778  T
Q  208 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 307  Q
     | || ||||||||||| ||||| ||| || ||||| ||||||||| ||||||||||||||||||||   ||||||| |||||||||||||||||||| |    
T  9190779 ttataaactctatatgg-cacaaggaaataaattcagcaagtattgcacatatacacttaaacacat---cacataatccacatattaatgcaagactcc 9190874  T
Q  308 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcatagataaacatt 378  Q
    || ||||||||||||| ||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||    
T  9190875 ccttaaaatgcacgactctattgcaaacacacgaaacattatcactctactcatcatcatagataaacatt 9190945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 10907354 - 10907129
Alignment:
Q  26 catatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctcccacatagttgctag 125  Q
    |||||| ||||||||| |||| |||||||||||||||||||| ||||||  ||||||||||||||||||||| || ||||||||||||||||||||| ||    
T  10907354 catatggactctcctatcgacatatatgaatgtggtaccacacctactcgtcattttgccagagttatattaatggacttttctcccacatagttgccag 10907255  T
Q  126 aggtatgtt-ttgaacttttctcccacattattgtcagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatgg 224  Q
    | |||||||  || ||||||||||||||| |||| |||||||||| | |||||||||| |||||||| |||||| ||    |||||||||||||||||||    
T  10907254 aagtatgttactggacttttctcccacataattgccagaagtatgttactggacttttttcccacat-atgcaatac-ttgtgctctagactctatatgg 10907157  T
Q  225 acacaatgaagtatattcaacaagtatt 252  Q
     | ||| ||| || |||| |||||||||    
T  10907156 ccgcaaagaattaaattcgacaagtatt 10907129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 44 - 370
Target Start/End: Original strand, 7848077 - 7848392
Alignment:
Q  44 gacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctcccacatagttgctagaggtatgtt-ttgaactt 142  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||| |||||||| | ||||||||||||||| |||||| | | ||||    
T  7848077 gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattagtggacttttct-caacatagttgctagagatatgttataggactt 7848175  T
Q  143 ttctcccacattattgtcagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattc 242  Q
    |||| | ||||  ||| |||||||||| |  || ||||||||||||||| |||||||||   ||||||||||||||||||| || ||| ||| || ||||    
T  7848176 ttct-caacatagttgccagaagtatgttagtgaacttttctcccacat-atgcaagac-ttatgctctagactctatatgaacgcaaggaattaaattc 7848272  T
Q  243 aacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 342  Q
     ||||||||        ||||| || |||||||||||||||  |||| ||| ||||||||| | | ||||||||||||||| ||| | ||| ||||||||    
T  7848273 gacaagtat--------tacacatatacacatagtcacatattccacctatgaatgcaagagtcctcctaaaatgcacgactctaatacaagcacacaaa 7848364  T
Q  343 atattaccactctcctcatcatcataga 370  Q
      || ||||||  | |||||||||||||    
T  7848365 tcatcaccactgacatcatcatcataga 7848392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 14745284 - 14745488
Alignment:
Q  44 gacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctcccacatagttgctagaggtatgttt-tgaactt 142  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||  || |||||||||  |||| ||||  |||| ||||||  |||||||    
T  14745284 gacctatatgaatgtggtaccacacctactcatcattttgccagagttttattgctggacttttctca-acatggttgtcagagatatgttactgaactt 14745382  T
Q  143 ttctcccacattattgtcagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattc 242  Q
    |||||  ||||  ||| |||||||||  | ||||||||||||||| ||| ||||||||||  |||||||||||||||||||||| ||   || ||| |||    
T  14745383 ttctca-acatagttgccagaagtatattactggacttttctcccgcat-atgcaagacattatgctctagactctatatggacgcatgaaattattttc 14745480  T
Q  243 aacaagta 250  Q
    ||||||||    
T  14745481 aacaagta 14745488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 8404355 - 8404268
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    |||||||||  ||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||| ||| || |||||||||    
T  8404355 atgcatatggtctctcctaacgacctatatgattgtggtaccactcctactcatcattttgccagagttatgttactggacttttctc 8404268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 21038287 - 21038200
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    ||||||||| |||||||||||||||||||||| ||||||| |||   |||||| ||||||||||||||||| ||| || |||||||||    
T  21038287 atgcatatggactctcctaacgacctatatgattgtggtatcactcttactcatcattttgccagagttatgttactggacttttctc 21038200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 22396793 - 22396727
Alignment:
Q  44 gacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  22396793 gacctatatgaatgtggtaccacacctactcatcattttgccagagttatattactagacttttctc 22396727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 31473722 - 31473656
Alignment:
Q  44 gacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||| || |||||||||    
T  31473722 gacctatatgaatgtggtaccacacttactcatcattttgccagagttatattactggacttttctc 31473656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 10641908 - 10641811
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||| |||||   |||||| |||||||||| ||| || |||||    
T  10641908 acatcatcatatatatgcatatggactctcctatcgacctatatgaatgtggtaccacacctacttgtcatttttccagagttatgttactgaacttt 10641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 31500309 - 31500246
Alignment:
Q  47 ctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||| || |||||||||    
T  31500309 ctatatgaatgtggtaccacacttactcatcattttgccagagttatattattggacttttctc 31500246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 21083907 - 21083842
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccaga 88  Q
    ||||||||| |||||||||||||||||||||| |||||||||||   |||||| ||||||||||||    
T  21083907 atgcatatggactctcctaacgacctatatgattgtggtaccactcttactcatcattttgccaga 21083842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 31494923 - 31494860
Alignment:
Q  47 ctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||| || | |||||||    
T  31494923 ctatatgaatgtggtaccacacttactcatcattttgccagagttatattattggatttttctc 31494860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 374
Target Start/End: Complemental strand, 10641612 - 10641512
Alignment:
Q  277 tcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaa---tattaccactctcctcatcatcatagataa 373  Q
    |||||||| ||||||| |||||||||| || |||||||||||||||  ||| ||||| |||||||||    || ||||||||| ||| ||||||||||||    
T  10641612 tcacataatccacatactaatgcaagattttccctaaaatgcacgaatctaatgcaagcacacaaaacatcatcaccactctcatcagcatcatagataa 10641513  T
Q  374 a 374  Q
    |    
T  10641512 a 10641512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 21083727 - 21083655
Alignment:
Q  269 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaa 341  Q
    ||||||| ||| ||||  |||||||||||||||||||| | |||||||||||||| ||| ||||| |||||||    
T  21083727 acacatattcaaataattcacatattaatgcaagactttcactaaaatgcacgactctaatgcaagcacacaa 21083655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 14980872 - 14980814
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  14980872 acatcatcatatatatgcatatggactctcctaatgacctatatgattgtggtaccaca 14980814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 14965650 - 14965715
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactc 74  Q
    ||||||||| |||||| | ||||| |||| ||| ||||||||||||||||||||||||| ||||||    
T  14965650 acatcatcatatacatccgtatgacctcttctatcgacctatatgaatgtggtaccacacctactc 14965715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 21038104 - 21038032
Alignment:
Q  269 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaa 341  Q
    ||||||| ||| ||||  |||||||||||||||||||  | |||||||||||||| ||| ||||| |||||||    
T  21038104 acacatattcaaataattcacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaa 21038032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 20147317 - 20147244
Alignment:
Q  33 actctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    |||||||||| |||||| ||||   |||||||||  ||||| ||||||||||||||||||| ||| || |||||    
T  20147317 actctcctaaggacctacatgatcatggtaccactcctactgaccattttgccagagttatgttactggacttt 20147244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 22185511 - 22185584
Alignment:
Q  33 actctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    |||||||||| |||||| ||||   |||||||||  ||||| ||||||||||||||||||| ||| || |||||    
T  22185511 actctcctaaggacctacatgatcatggtaccactcctactgaccattttgccagagttatgttactggacttt 22185584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 374
Target Start/End: Complemental strand, 13478011 - 13477664
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctcccacat-agttg 121  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||| || || |||| || |||| | |||    
T  13478011 atgcatatgaactctcctatcgacctatatgaatgtggtaccacacctactcatcatttttccagagttatgttactggac-tttcacctacataatttg 13477913  T
Q  122 ctagaggtatgtt-ttgaacttttctcccacattattgt-cagaagtatggtgctggacttttctcccacatc-atgcaagacaccatgctctagactct 218  Q
    |||||||||||||  || || |||| ||  ||| ||| | |||| ||||| | |||||||||||| | ||||| ||||| || |||||||||||||||||    
T  13477912 ctagaggtatgttactggac-tttcacctgcataattttccagaggtatgttactggacttttct-cgacatcaatgcatgataccatgctctagactct 13477815  T
Q  219 atatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatatt-aatgcaagacttcccctaaaatg 317  Q
    ||||| ||  || ||| || |||| |||||| ||  |  |||||||||||        | |||||||||||||||| ||||||||  | |||||||||||    
T  13477814 atatgaacgtaaagaattaaattcgacaagt-ttacatgtatacacttaa--------ttacataacccacatattaaatgcaagtatccccctaaaatg 13477724  T
Q  318 cacgacactattgcaaacacacaaaa---tattaccactctcctcatcatcatagataaa 374  Q
     ||||| ||  ||||| |||||||||    || ||||||||| |||||||||||||||||    
T  13477723 aacgactctgatgcaagcacacaaaacaccatcaccactctcatcatcatcatagataaa 13477664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 11655052 - 11655149
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||  |||||||||| |||||| ||| || |||||    
T  11655052 acatcatcatatatatgcatatggactctcctatcgacctatatgaatgtggtaccacacctactcgtcattttgccaaagttatgttattggacttt 11655149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 37946399 - 37946307
Alignment:
Q  19 atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactc-accattttgccagagttatattagtgtacttttctc 110  Q
    ||||||||||||| |||||||||||||| | ||||||||||||| |||| ||||||  |||||||||||||||||| ||| || |||||||||    
T  37946399 atacatgcatatggactctcctaacgacatgtatgaatgtggtaacacacctactcttccattttgccagagttatgttattggacttttctc 37946307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 374
Target Start/End: Complemental strand, 22615021 - 22614921
Alignment:
Q  277 tcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaa---tattaccactctcctcatcatcatagataa 373  Q
    ||||||||  ||||||||||||||||| ||||| ||||||||||||| ||| ||||| |||||||||    || ||||||||| ||||||||||||||||    
T  22615021 tcacataattcacatattaatgcaagatttcccataaaatgcacgactctaatgcaagcacacaaaacatcatcaccactctcatcatcatcatagataa 22614922  T
Q  374 a 374  Q
    |    
T  22614921 a 22614921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 4532287 - 4532203
Alignment:
Q  26 catatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    |||||| | |||||||||| ||||||||| |||||||||||  ||||||| |||||||||| |||||| ||| || |||||||||    
T  4532287 catatggaatctcctaacggcctatatgattgtggtaccactcctactcatcattttgccatagttatgttactggacttttctc 4532203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 20025511 - 20025595
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttat 93  Q
    ||||||||| ||||||||||||| |||||||||  ||||||||| |||||||||||||| |||||||  ||||  ||||||||||    
T  20025511 acatcatcatatacatgcatatggactctcctatagacctatattaatgtggtaccacacctactcattatttcaccagagttat 20025595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 11655311 - 11655411
Alignment:
Q  277 tcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaa---tattaccactctcctcatcatcatagataa 373  Q
    ||||||||  |||||| |||||||||| || || ||||||||||||| ||| ||||| |||| ||||    || ||||||||| ||||||||||||||||    
T  11655311 tcacataattcacatactaatgcaagattttccataaaatgcacgactctaatgcaagcacaaaaaacatcatcaccactctcatcatcatcatagataa 11655410  T
Q  374 a 374  Q
    |    
T  11655411 a 11655411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 343
Target Start/End: Complemental strand, 37946298 - 37946115
Alignment:
Q  156 ttgtcagaagtatggtgctggacttt-tctcccacatca-tgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattg 253  Q
    |||||||| ||||| |  |||||||| ||||||| |||| |||||| || |||||||||||||||||||| || | |  || || |||| ||||||| ||    
T  37946298 ttgtcagaggtatgttattggactttctctcccaaatcaatgcaaggcatcatgctctagactctatatgaacgcgaataattaaattcgacaagtactg 37946199  T
Q  254 gacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc-ccctaaaatgcacgacactattgcaaacacacaaaa 343  Q
     || ||||||||||| ||||||       || |||||||||||||||||||| | ||||||||| ||| || | | ||||| |||||||||    
T  37946198 cacgtatacacttaatcacata-------aatccacatattaatgcaagactcctccctaaaattcacaactcgaatgcaagcacacaaaa 37946115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 22615282 - 22615224
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||||||||| |||||| || | |||||||||||||||||||||||    
T  22615282 acatcatcatatatatgcatatggactctcttatctacctatatgaatgtggtaccaca 22615224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 11655236 - 11655272
Alignment:
Q  193 atgcaagacaccatgctctagactctatatggacaca 229  Q
    |||||||||| |||||||||||||||| |||||||||    
T  11655236 atgcaagacatcatgctctagactctacatggacaca 11655272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 48376316 - 48376360
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||||| |||| ||||||||||| ||||||||||||    
T  48376316 atgcatatggactcttctaatgacctatatgactgtggtaccaca 48376360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 6821052 - 6821192
Alignment:
Q  44 gacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctcccacatagttgctagaggtatgtt-ttgaactt 142  Q
    |||||||||||||||||||||||| ||||||| | ||||||||||||||||||| || |||||||| | |||||||||| |||| ||||||  || ||||    
T  6821052 gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactggacttttct-caacatagttgccagagatatgttactggactt 6821150  T
Q  143 ttctcccacattattgtcagaagtatggtgctggacttttctc 185  Q
    |||| | ||||  |||||||||||||| | |||||||||||||    
T  6821151 ttct-caacatagttgtcagaagtatgttactggacttttctc 6821192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 15873464 - 15873377
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    ||||||||| |||||||||||||||||||||| |||||||||||  ||||||| ||||| ||||||||||| ||| || |||||||||    
T  15873464 atgcatatggactctcctaacgacctatatgattgtggtaccactcctactcatcatttagccagagttatgttactggacttttctc 15873377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 323
Target Start/End: Original strand, 6821200 - 6821357
Alignment:
Q  156 ttgtcagaagtatggtgctggacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattgga 255  Q
    |||||||||||||| | ||||| ||||||||||||| |||||||||   ||||||||||||||||||| || ||| ||| || |||| ||||||||        
T  6821200 ttgtcagaagtatgttactggaattttctcccacat-atgcaagactt-atgctctagactctatatgaacgcaaggaattaaattcgacaagtat---- 6821293  T
Q  256 catatacacttaaacacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgac 323  Q
        ||||| || |||||||||||||||  |||| ||| ||||||||||| |||||||||||||||||    
T  6821294 ----tacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcacgac 6821357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 16285611 - 16285528
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||| || |||||    
T  16285611 atgcatatggactctcctttcgacctatatgaatgtggtaccacacctactcgtcattttgccagagttatgttactggacttt 16285528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 373
Target Start/End: Original strand, 9564155 - 9564241
Alignment:
Q  287 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcatagataa 373  Q
    |||||||||||| |||||| ||||||| ||||||||| ||| ||||||||||||||  || || |||||| ||||||||||||||||    
T  9564155 cacatattaatgtaagactccccctaatatgcacgactctaatgcaaacacacaaatcatcacaactctcatcatcatcatagataa 9564241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 11555539 - 11555636
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||| ||||||||| |||||||||  |||| ||||||||| ||||||||| ||||||| ||||||||||||||||| ||| || |||||    
T  11555539 acatcatcatatatatgcatatggactctcctattgaccaatatgaatgcggtaccacacctactcatcattttgccagagttatgttactggacttt 11555636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 11936278 - 11936346
Alignment:
Q  278 cacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatat 346  Q
    ||||||| ||||||||||||| |||||  ||||||| ||||||||| ||| ||||| ||||||||||||    
T  11936278 cacataatccacatattaatgtaagacaccccctaagatgcacgactctaatgcaagcacacaaaatat 11936346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 11331364 - 11331427
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctac 72  Q
    ||||||||| ||||||||||||| | ||||||||| ||||||||||||||| ||||||| ||||    
T  11331364 acatcatcatatacatgcatatggattctcctaacaacctatatgaatgtgataccacacctac 11331427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 368
Target Start/End: Complemental strand, 15873247 - 15873166
Alignment:
Q  287 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcata 368  Q
    |||||||||||||||||||  | |||||||||||||| ||| ||||| ||||||||  |||| ||  ||| |||||||||||    
T  15873247 cacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaaatcattaacatactcatcatcatcata 15873166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 12136640 - 12136696
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtacca 65  Q
    ||||||||| ||| ||||||||| | |||||||||||||||||||| ||||||||||    
T  12136640 acatcatcatatatatgcatatggaatctcctaacgacctatatgattgtggtacca 12136696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 12228569 - 12228653
Alignment:
Q  23 atgcatatgaactctcctaacg-acctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||  ||||||   ||||| |||||||||| ||| || |||||    
T  12228569 atgcatatgaactctcctatcggacctatatgaatgtggtacaacgcctactcgttatttttccagagttatgttactggacttt 12228653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 305
Target Start/End: Original strand, 11555762 - 11555866
Alignment:
Q  193 atgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacata 292  Q
    ||||| ||||||||||||||||||| ||||| ||  || ||| || |||| |||||||||  || |||||||||||        ||||||||||||||||    
T  11555762 atgcacgacaccatgctctagactcaatatgaacgtaaagaattaaattcgacaagtattacacgtatacacttaa--------tcacataacccacata 11555853  T
Q  293 ttaatgcaagact 305  Q
    |||||||| ||||    
T  11555854 ttaatgcacgact 11555866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 12136853 - 12136899
Alignment:
Q  287 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaa 333  Q
    ||||||||||||||||||| || |||||||||||||| ||| |||||    
T  12136853 cacatattaatgcaagactcccactaaaatgcacgactctaatgcaa 12136899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 367
Target Start/End: Original strand, 24757320 - 24757469
Alignment:
Q  208 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 307  Q
    ||||||||| ||||||| ||||| ||  || ||||||||||||||| |||||||||||||| |||||||          |||||||||||||||||||      
T  24757320 ctctagactttatatggccacaaggacataaattcaacaagtattgtacatatacacttaaccacatag----------cacatattaatgcaagactct 24757409  T
Q  308 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcat 367  Q
    |||||||||||||||| |||||||||  |||||||| |||||||||| | ||| ||||||    
T  24757410 ccctaaaatgcacgactctattgcaagaacacaaaacattaccactcccttcaccatcat 24757469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 24614922 - 24615019
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||| ||| || |||||    
T  24614922 acatcatcatatacatgcatatggactctcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24615019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 24711320 - 24711417
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||| ||| || |||||    
T  24711320 acatcatcatatacatgcatatggactctcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24711417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 24744316 - 24744413
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||| ||| || |||||    
T  24744316 acatcatcatatacatgcatatggactctcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24744413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 24757082 - 24757179
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||| ||| || |||||    
T  24757082 acatcatcatatacatgcatatggactctcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24757179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 367
Target Start/End: Original strand, 24615160 - 24615309
Alignment:
Q  208 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 307  Q
    ||||||||| || |||| ||||| ||  || ||||| ||||||||| |||||||||||||| |||||||          |||||||||||||||||||      
T  24615160 ctctagactttaaatggccacaaggacataaattcagcaagtattgtacatatacacttaaccacatag----------cacatattaatgcaagactct 24615249  T
Q  308 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcat 367  Q
    | |||||||||||||| |||||||||  |||||||| |||||||||| | ||| ||||||    
T  24615250 ctctaaaatgcacgactctattgcaagaacacaaaacattaccactcccttcaccatcat 24615309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 367
Target Start/End: Original strand, 24711558 - 24711707
Alignment:
Q  208 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 307  Q
    ||||||||| || |||| ||||| ||  || ||||| ||||||||| |||||||||||||| |||||||          |||||||||||||||||||      
T  24711558 ctctagactttaaatggccacaaggacataaattcagcaagtattgtacatatacacttaaccacatag----------cacatattaatgcaagactct 24711647  T
Q  308 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcat 367  Q
    | |||||||||||||| |||||||||  |||||||| |||||||||| | ||| ||||||    
T  24711648 ctctaaaatgcacgactctattgcaagaacacaaaacattaccactcccttcaccatcat 24711707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 367
Target Start/End: Original strand, 24744554 - 24744703
Alignment:
Q  208 ctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttc 307  Q
    ||||||||| || |||| ||||| ||  || ||||| ||||||||| |||||||||||||| |||||||          |||||||||||||||||||      
T  24744554 ctctagactttaaatggccacaaggacataaattcagcaagtattgtacatatacacttaaccacatag----------cacatattaatgcaagactct 24744643  T
Q  308 ccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcat 367  Q
    | |||||||||||||| |||||||||  |||||||| |||||||||| | ||| ||||||    
T  24744644 ctctaaaatgcacgactctattgcaagaacacaaaacattaccactcccttcaccatcat 24744703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 368
Target Start/End: Original strand, 13935430 - 13935597
Alignment:
Q  193 atgcaagacaccatgctctagactctatatggacacaatgaagtatattcaacaagtattggacatatacacttaaacacatagtcacataacccacata 292  Q
    ||||| |||| |||||||||||||||||||| |||||| ||| || |||| |||||||        |||||  || ||||| |||||||||| |||||||    
T  13935430 atgcacgacatcatgctctagactctatatgaacacaaagaattaaattcgacaagta--------atacatgtatacacaaagtcacataatccacata 13935521  T
Q  293 ttaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaaatattaccactctcctcatcatcata 368  Q
    ||||||||| |||| ||||||||| ||| ||  ||  |||| ||||||||  |  ||||||||| |||||||||||    
T  13935522 ttaatgcaaaactttccctaaaatccacaactgtaaggcaagcacacaaatcaccaccactctcatcatcatcata 13935597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 24832569 - 24832511
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||||||||| ||||||||| |||||||||||||||||||||||||    
T  24832569 acatcatcatatatatgcatatggactctcctatcgacctatatgaatgtggtaccaca 24832511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 21974784 - 21974871
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||  ||||||| ||||||||||||||||| ||| || |||||||||    
T  21974784 atgcatatggactctcctaacgacctatatgattgtggtacaactcctactcatcattttgccagagttatgttactggacttttctc 21974871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 21997215 - 21997302
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||  ||||||| ||||||||||||||||| ||| || |||||||||    
T  21997215 atgcatatggactctcctaacgacctatatgattgtggtacaactcctactcatcattttgccagagttatgttactggacttttctc 21997302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 13929316 - 13929215
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttc 108  Q
    ||||||||| ||| ||||||||| ||||| ||||||||||||| || |||||||||||  ||||||| ||||||||||||||||| ||| || |||||||    
T  13929316 acatcatcacatatatgcatatggactcttctaacgacctataagattgtggtaccactcctactcatcattttgccagagttatgttactggacttttc 13929217  T
Q  109 tc 110  Q
    ||    
T  13929216 tc 13929215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 16363160 - 16363092
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagtt 91  Q
    ||||||||| |||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||    
T  16363160 atgcatatgtactctcctaacgacctatatgattgtggtaccactcctactcatcattttgccagagtt 16363092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 22159359 - 22159445
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttttctc 110  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||   |||||| ||||| ||||||||||| ||| || |||||||||    
T  22159359 atgcatatggactctcctaacaacctatatgattgtggtaccactcatactcatcatttcgccagagttatgttactg-acttttctc 22159445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 4713406 - 4713348
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  4713406 acatcatcatatatatgcatatggactctcctaatgacctatatgattgtggtaccaca 4713348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 14482154 - 14482096
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||| ||||| ||||||||| |||||||||||||||||||||||||    
T  14482154 acatcatcatatatatgtatatggactctcctatcgacctatatgaatgtggtaccaca 14482096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 16362963 - 16362890
Alignment:
Q  269 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 342  Q
    ||||||| ||| ||||  |||||||||||||||||||  | |||||||||||||| ||| ||||| ||||||||    
T  16362963 acacatattcaaataattcacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaaa 16362890  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 21974983 - 21975056
Alignment:
Q  269 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 342  Q
    ||||||| ||| ||||  |||||||||||||||||||  | |||||||||||||| ||| ||||| ||||||||    
T  21974983 acacatattcaaataattcacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaaa 21975056  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 21997414 - 21997487
Alignment:
Q  269 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 342  Q
    ||||||| ||| ||||  |||||||||||||||||||  | |||||||||||||| ||| ||||| ||||||||    
T  21997414 acacatattcaaataattcacatattaatgcaagactctcactaaaatgcacgactctaatgcaagcacacaaa 21997487  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 22159558 - 22159609
Alignment:
Q  287 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacaca 338  Q
    |||||||||||||||||||  | |||||||||||||| ||| ||||||||||    
T  22159558 cacatattaatgcaagactctcactaaaatgcacgactctaatgcaaacaca 22159609  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 14055634 - 14055576
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| |||| |||| |||||||||| ||||||||||| ||||||||||||    
T  14055634 acatcatcatatatatgcctatggactctcctaatgacctatatgattgtggtaccaca 14055576  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 16614015 - 16614073
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||||||||| ||||||||||  |||||||||| ||||||||||||    
T  16614015 acatcatcatatatatgcatatggactctcctaataacctatatgattgtggtaccaca 16614073  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 13927226 - 13927154
Alignment:
Q  269 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaa 341  Q
    ||||||| ||| ||||  ||||||||| ||||||||| || ||||||||||| || ||| ||||| |||||||    
T  13927226 acacatattcaaataattcacatattagtgcaagactcccactaaaatgcacaactctaatgcaagcacacaa 13927154  T

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Target: scaffold1001 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 981 - 1054
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatatt 96  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||    
T  981 atgcatatggactctcctatcgacctatatgaatgtggtaccacacctactcgtcattttgtcagagttatatt 1054  T

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Target: scaffold1001; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 374
Target Start/End: Original strand, 1226 - 1326
Alignment:
Q  277 tcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaa---aatattaccactctcctcatcatcatagataa 373  Q
    |||||||| ||||| | |||| ||||| ||||||||||||||| |||  || ||||| |||||||   || || ||||||||| ||||||||||||||||    
T  1226 tcacataatccacagactaatacaagatttcccctaaaatgcatgactataatgcaagcacacaaaacaacatcaccactctcatcatcatcatagataa 1325  T
Q  374 a 374  Q
    |    
T  1326 a 1326  T

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Target: scaffold0092 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 20180 - 20110
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttat 93  Q
    ||||||||| |||||||||||||||| ||||| |||||||||||  ||||||| |||||||||||||||||    
T  20180 atgcatatggactctcctaacgacctgtatgattgtggtaccactcctactcatcattttgccagagttat 20110  T

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Target: scaffold0385 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 13774 - 13842
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagtt 91  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||  ||||||| |||||||||||||||    
T  13774 atgcatatgtactctcctaacgatctatatgattgtggtaccactcctactcatcattttgccagagtt 13842  T

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Target: scaffold0385; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 13972 - 14045
Alignment:
Q  269 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 342  Q
    ||||||| ||| ||||  |||||||||||| ||||||  | |||||||||||||| ||| ||||| ||||||||    
T  13972 acacatattcaaataattcacatattaatggaagactctcactaaaatgcacgactctaatgcaagcacacaaa 14045  T

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Target: scaffold0145 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 12105 - 12188
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||||||||  ||||||||||||||||||||||| | ||||||  ||||||||||||||||| ||| || |||||    
T  12105 atgcatatggactctcctttcgacctatatgaatgtggtaccaaacctactcgtcattttgccagagttatgttactggacttt 12188  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 23658102 - 23658146
Alignment:
Q  23 atgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  23658102 atgcatatggactctcctaacgacctatatgattgtggtaccaca 23658146  T

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Target: scaffold0601 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 5442 - 5345
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccacatctactcaccattttgccagagttatattagtgtacttt 106  Q
    ||||||||| ||| ||||||||| |||||||||| || ||| || | |||||||||||  ||||||||||| ||||| | ||||||||| || |||||    
T  5442 acatcatcacataaatgcatatggactctcctaaggaactacataagtgtggtaccactcctactcaccatcttgccggtgttatattactggacttt 5345  T

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Target: scaffold0737 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 3985 - 3930
Alignment:
Q  287 cacatattaatgcaagacttcccctaaaatgcacgacactattgcaaacacacaaa 342  Q
    |||||||||||| |||||| || |||||||||||||| ||| ||||| ||||||||    
T  3985 cacatattaatgtaagactcccactaaaatgcacgactctaatgcaagcacacaaa 3930  T

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Target: scaffold0239 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 21748 - 21690
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| || |||||| |||||||||| ||||||||||| ||||||||||||    
T  21748 acatcatcatatatatacatatggactctcctaaagacctatatgattgtggtaccaca 21690  T

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Target: scaffold0218 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 13887 - 13945
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||||||||| |||||||||| ||| ||||||| ||||||||||||    
T  13887 acatcatcatatatatgcatatggactctcctaatgacgtatatgattgtggtaccaca 13945  T

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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 28868 - 28810
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||||||||| |||||||||| ||||| ||||| ||||||||||||    
T  28868 acatcatcatatatatgcatatggactctcctaatgacctctatgattgtggtaccaca 28810  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 130298 - 130356
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||||||||| |||||||||| || |||||||| ||||||||||||    
T  130298 acatcatcatatatatgcatatggactctcctaatgatctatatgattgtggtaccaca 130356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 13882876 - 13882818
Alignment:
Q  10 acatcatca-atacatgcatatgaactctcctaacgacctatatgaatgtggtaccaca 67  Q
    ||||||||| ||| ||||||||| ||||||||||  |||||||||| ||||||||||||    
T  13882876 acatcatcatatatatgcatatggactctcctaaaaacctatatgattgtggtaccaca 13882818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 15541198 - 15541252
Alignment:
Q  269 acacatagtcacataacccacatattaatgcaagacttcccctaaaatgcacgac 323  Q
    |||| ||||||||||| ||||||||||||  |||| | |||||||||||||||||    
T  15541198 acacctagtcacataatccacatattaattgaagagtccccctaaaatgcacgac 15541252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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