View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5390_high_7 (Length: 376)
Name: NF5390_high_7
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 39 - 367
Target Start/End: Complemental strand, 11583944 - 11583613
Alignment:
| Q |
39 |
attatttaaaaaactataacaaactggttcaaattataagatcacaaattattttattaaagcaataattacctgtttgattctttgtattaaattatat |
138 |
Q |
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| T |
11583944 |
attatttaaaaaactataacaaactggttcaaattataagatcacaaattattttattaaaacaataattacctattttattctttgtattaaattaaat |
11583845 |
T |
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| Q |
139 |
agttgcannnnnnnn---ggtgtgaactctggtattttatgttgagacggttagagattaatatttccaaataccatgattgtttttgaggttgacatat |
235 |
Q |
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| T |
11583844 |
agttgtatttttttttttggtgtgaactctggtattttatgttgagacggttagagattaatatttccaaataccatgattgtttatgaggttgacatat |
11583745 |
T |
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| Q |
236 |
ttcaacaaatgatattttttgttgatattattctatatttccatatgcatcaatctaaaacaatatttatagttaaacattcaagagaccatattattca |
335 |
Q |
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| T |
11583744 |
ttcaacaaatgatgttttttgttgatattattccatatttccatatgcatcaatctaaaacaatactcatagttaaacattcaagagaccatattattca |
11583645 |
T |
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| Q |
336 |
caagaaaaccgcatcatattagttagtattat |
367 |
Q |
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| T |
11583644 |
caagaataccgcatcatattagttattattat |
11583613 |
T |
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