View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5390_high_8 (Length: 370)
Name: NF5390_high_8
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 102 - 354
Target Start/End: Complemental strand, 48542300 - 48542048
Alignment:
| Q |
102 |
ttttgatatcttatccgaattgttatgactaactcttattgtttggttcatgtaggttttccattgttttggtcaatatttttgtctccattttgaagca |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48542300 |
ttttgatatcttatccaaattgttatgactaactcttattgtttggttcatgtaggttttccattgttttggtcaatatttttgtctccattttgaagca |
48542201 |
T |
|
| Q |
202 |
ttccagcttgaaacgtcacctgtttacatggcatttcttcgattcatgggtgatgatagagacgccaagaactacagctacagcttagaagtgggaggaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48542200 |
ttccagcttgaaacgtcacctgtttacatggcgtttcttcgattcatgggtgatgacagagacgccaagaactacagctacagcttagaagtgggaggaa |
48542101 |
T |
|
| Q |
302 |
atggacgtaaactaacatttgaagggagtccaagaagcattagagatagtcac |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48542100 |
atggacgtaaactaacatttgaagggagtccaagaagcattagagatagtcac |
48542048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 48542596 - 48542488
Alignment:
| Q |
1 |
aagtagaaaatgctacttggatgctaacggtaattatgactcttaacaaaatttgctatttattgatcggtttagttatttagcaactgatgaattcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48542596 |
aagtagaaaatgctacttggatgctaacggtaattatgacccttaacaaaatttgctatttattgatcggtttagttatttagcaactgatgaattcaga |
48542497 |
T |
|
| Q |
101 |
tttttgata |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
48542496 |
tttttgata |
48542488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 284
Target Start/End: Original strand, 9837124 - 9837254
Alignment:
| Q |
154 |
taggttttccattgttttggtcaatatttttgtctccattttgaagcattccagcttgaaacgtcacctgtttacatggcatttcttcgattcatgggtg |
253 |
Q |
| |
|
||||| ||||| |||||||| |||||||| ||||||||||||||||| || || |||| || | | || ||||||||||||||||| || |||||||| | |
|
|
| T |
9837124 |
taggtcttccactgttttggacaatatttctgtctccattttgaagcctttcaacttggaatggctccagtttacatggcatttctccgtttcatgggag |
9837223 |
T |
|
| Q |
254 |
atgatagagacgccaagaactacagctacag |
284 |
Q |
| |
|
|||| ||||| |||| || |||||||||||| |
|
|
| T |
9837224 |
atgaaagagatgccaggagctacagctacag |
9837254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 41633105 - 41633007
Alignment:
| Q |
153 |
gtaggttttccattgttttggtcaatatttttgtctccattttgaagcattccagcttgaaacgtcacctgtttacatggcatttcttcgattcatggg |
251 |
Q |
| |
|
|||||| || ||||||||||| |||||||| || || ||||| ||||| || ||||||| | | | ||||||||||||||||| ||||| || ||||| |
|
|
| T |
41633105 |
gtaggtatttcattgttttggccaatatttctgccttcatttcgaagcttttcagcttggcatggcccctgtttacatggcattccttcggtttatggg |
41633007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University