View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5390_low_11 (Length: 300)
Name: NF5390_low_11
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 30406930 - 30407208
Alignment:
| Q |
7 |
ggacatcatcaacccacctaccaaaataaaggtactcgaccccccgctaggccatatctagcagccaagagtctaaaccaaagaccctttgtctgccgcc |
106 |
Q |
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| T |
30406930 |
ggacatcatcaacccacctaccaaaataaaggtactcgatcccccactaggccatatctagcagccaagagtctaaaccaaagacccttcgtctgccacc |
30407029 |
T |
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| Q |
107 |
tacctccaataccatttatccaaccatattaaactccctcattctccttgcccctaaaccgtcaatctccttgtccaaacagatatgactttaactacat |
206 |
Q |
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| T |
30407030 |
tacctccaataccatttatccaaccatattaaactccctcattctccttgcccctaaaccgccaatctccttatccaaacagatatgactttaactacat |
30407129 |
T |
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| Q |
207 |
cacataaacaacctccttcaacttaatgttggaattattttagagaaaatacaaacaagtgtcctctaggcattgttta |
285 |
Q |
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| T |
30407130 |
cacataaacaacctccttcaacttaatgttggaattattttaaagaaaatacaaacaagtgtcctctaggcattgttta |
30407208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 30403149 - 30403197
Alignment:
| Q |
200 |
actacatcacataaacaacctccttcaacttaatgttggaattatttta |
248 |
Q |
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||||||| | |||||||||||||| ||||||||| |||||||||||||| |
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| T |
30403149 |
actacataatataaacaacctcctccaacttaatattggaattatttta |
30403197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 25132768 - 25132828
Alignment:
| Q |
130 |
ccatattaaactccctcattctccttgcccctaaaccgtcaatctccttgtccaaacagat |
190 |
Q |
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| T |
25132768 |
ccatattaaactctctaattctccttagccccaaaccaccaacctccttgtccaaacagat |
25132828 |
T |
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