View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5390_low_12 (Length: 294)

Name: NF5390_low_12
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5390_low_12
NF5390_low_12
[»] chr3 (36 HSPs)
chr3 (1-177)||(44490161-44490335)
chr3 (178-294)||(44490363-44490479)
chr3 (222-286)||(2432891-2432955)
chr3 (216-294)||(34645617-34645694)
chr3 (220-294)||(45098864-45098938)
chr3 (216-284)||(41579674-41579742)
chr3 (226-294)||(43571625-43571693)
chr3 (216-294)||(19440311-19440390)
chr3 (240-294)||(43478769-43478823)
chr3 (216-294)||(2267111-2267189)
chr3 (220-294)||(13894285-13894360)
chr3 (220-294)||(55267474-55267549)
chr3 (216-286)||(7247808-7247878)
chr3 (240-294)||(16484395-16484449)
chr3 (240-294)||(20374301-20374355)
chr3 (242-294)||(51693960-51694012)
chr3 (220-294)||(4002773-4002847)
chr3 (216-294)||(34691680-34691759)
chr3 (259-294)||(42321826-42321861)
chr3 (259-294)||(50457594-50457629)
chr3 (216-286)||(46344992-46345062)
chr3 (260-294)||(49217190-49217224)
chr3 (260-294)||(51017123-51017157)
chr3 (259-294)||(2645554-2645589)
chr3 (259-294)||(11377344-11377379)
chr3 (259-294)||(44929302-44929337)
chr3 (216-294)||(50998594-50998672)
chr3 (260-294)||(2950465-2950499)
chr3 (260-294)||(46406531-46406565)
chr3 (260-294)||(49138713-49138747)
chr3 (260-294)||(52567858-52567892)
chr3 (260-294)||(54391968-54392002)
chr3 (178-235)||(52567721-52567778)
chr3 (218-294)||(18442062-18442138)
chr3 (218-294)||(19487136-19487212)
chr3 (234-286)||(41805622-41805674)
[»] chr7 (24 HSPs)
chr7 (216-286)||(46860566-46860636)
chr7 (178-294)||(28112800-28112916)
chr7 (216-294)||(10225783-10225861)
chr7 (178-294)||(40590489-40590606)
chr7 (222-294)||(36392186-36392258)
chr7 (220-294)||(45361682-45361757)
chr7 (219-294)||(34142598-34142674)
chr7 (230-294)||(41623814-41623878)
chr7 (216-280)||(48272380-48272444)
chr7 (222-286)||(42684145-42684208)
chr7 (216-294)||(34139668-34139746)
chr7 (235-294)||(46596960-46597019)
chr7 (260-294)||(43349739-43349773)
chr7 (224-286)||(48314736-48314798)
chr7 (261-294)||(20876415-20876448)
chr7 (259-294)||(17185009-17185044)
chr7 (219-286)||(21185693-21185760)
chr7 (259-294)||(42736809-42736844)
chr7 (260-294)||(9365778-9365812)
chr7 (260-294)||(15070454-15070488)
chr7 (260-294)||(20566273-20566307)
chr7 (260-294)||(22292676-22292710)
chr7 (260-294)||(42503916-42503950)
chr7 (240-294)||(48194571-48194625)
[»] chr4 (29 HSPs)
chr4 (216-294)||(33383860-33383938)
chr4 (222-294)||(51426598-51426670)
chr4 (216-294)||(44558704-44558782)
chr4 (220-294)||(1044484-1044559)
chr4 (220-294)||(9491224-9491299)
chr4 (216-294)||(49572840-49572918)
chr4 (217-294)||(4783702-4783779)
chr4 (217-286)||(37959668-37959737)
chr4 (218-294)||(4909879-4909955)
chr4 (238-294)||(56140630-56140686)
chr4 (216-294)||(955847-955924)
chr4 (220-294)||(37868208-37868283)
chr4 (217-294)||(6280913-6280991)
chr4 (216-294)||(34151669-34151747)
chr4 (222-294)||(21410193-21410265)
chr4 (259-294)||(36774808-36774843)
chr4 (216-294)||(39590507-39590586)
chr4 (259-294)||(43887597-43887632)
chr4 (217-294)||(28083930-28084007)
chr4 (260-293)||(51026153-51026186)
chr4 (259-294)||(21015837-21015872)
chr4 (259-294)||(22438459-22438494)
chr4 (259-294)||(55799469-55799504)
chr4 (260-294)||(6175976-6176010)
chr4 (259-293)||(40352434-40352468)
chr4 (260-294)||(41793463-41793497)
chr4 (260-294)||(49096258-49096292)
chr4 (240-289)||(21171257-21171305)
chr4 (217-286)||(24076809-24076878)
[»] chr2 (22 HSPs)
chr2 (216-294)||(8268689-8268767)
chr2 (217-294)||(35493281-35493358)
chr2 (220-294)||(19470017-19470091)
chr2 (216-294)||(23409441-23409519)
chr2 (217-294)||(40675794-40675871)
chr2 (216-294)||(3943131-3943210)
chr2 (225-294)||(43493224-43493292)
chr2 (220-283)||(16583545-16583609)
chr2 (234-294)||(41497546-41497606)
chr2 (260-294)||(10358896-10358930)
chr2 (260-294)||(23719445-23719479)
chr2 (260-294)||(24107117-24107151)
chr2 (240-294)||(29090655-29090709)
chr2 (217-294)||(34639253-34639331)
chr2 (259-294)||(34520064-34520099)
chr2 (259-294)||(45435146-45435181)
chr2 (260-294)||(3935962-3935996)
chr2 (260-294)||(5422160-5422194)
chr2 (260-294)||(28477007-28477041)
chr2 (260-294)||(37311062-37311096)
chr2 (260-294)||(43984241-43984275)
chr2 (222-286)||(2917744-2917808)
[»] chr6 (15 HSPs)
chr6 (226-294)||(34801569-34801637)
chr6 (222-286)||(13404580-13404644)
chr6 (217-294)||(13616296-13616374)
chr6 (216-294)||(29076263-29076341)
chr6 (216-294)||(29109796-29109874)
chr6 (216-294)||(29111236-29111314)
chr6 (217-294)||(14124658-14124735)
chr6 (216-294)||(35019631-35019710)
chr6 (242-294)||(17126912-17126964)
chr6 (216-294)||(29068205-29068284)
chr6 (216-294)||(29083452-29083531)
chr6 (259-294)||(32691283-32691318)
chr6 (260-294)||(11693967-11694001)
chr6 (259-292)||(12398626-12398659)
chr6 (178-230)||(6320552-6320604)
[»] chr5 (26 HSPs)
chr5 (222-294)||(25499827-25499899)
chr5 (216-286)||(3603096-3603166)
chr5 (220-286)||(18309995-18310061)
chr5 (216-294)||(34682312-34682390)
chr5 (224-294)||(35566967-35567037)
chr5 (240-294)||(30887317-30887371)
chr5 (216-294)||(540981-541060)
chr5 (259-294)||(7483856-7483891)
chr5 (220-294)||(11348441-11348515)
chr5 (259-294)||(36348728-36348763)
chr5 (240-294)||(41798898-41798952)
chr5 (221-286)||(7401816-7401881)
chr5 (240-293)||(8574801-8574853)
chr5 (262-294)||(1973198-1973230)
chr5 (216-287)||(1398659-1398730)
chr5 (259-294)||(1696564-1696599)
chr5 (259-294)||(8539482-8539517)
chr5 (259-294)||(27660038-27660073)
chr5 (259-294)||(41088232-41088267)
chr5 (260-294)||(5895-5929)
chr5 (260-294)||(11028944-11028978)
chr5 (260-294)||(19035337-19035371)
chr5 (260-294)||(38855651-38855685)
chr5 (264-294)||(40937253-40937283)
chr5 (216-294)||(41201783-41201861)
chr5 (222-286)||(20200097-20200160)
[»] chr1 (29 HSPs)
chr1 (220-294)||(27485092-27485167)
chr1 (216-294)||(49398410-49398487)
chr1 (222-294)||(36911636-36911708)
chr1 (216-286)||(6437487-6437557)
chr1 (216-294)||(26633582-26633660)
chr1 (220-294)||(35524798-35524872)
chr1 (216-294)||(44336304-44336383)
chr1 (217-294)||(49924912-49924990)
chr1 (217-280)||(18975074-18975137)
chr1 (224-294)||(13148987-13149052)
chr1 (236-294)||(14172163-14172221)
chr1 (240-294)||(44598845-44598899)
chr1 (259-294)||(33285789-33285824)
chr1 (259-294)||(39855588-39855623)
chr1 (220-294)||(26497826-26497900)
chr1 (260-294)||(38043550-38043584)
chr1 (240-294)||(51271530-51271584)
chr1 (261-294)||(12789809-12789842)
chr1 (216-290)||(24362344-24362419)
chr1 (224-294)||(29437959-29438030)
chr1 (232-294)||(42570193-42570256)
chr1 (259-294)||(49260027-49260062)
chr1 (259-294)||(49429101-49429136)
chr1 (260-294)||(13633965-13633999)
chr1 (260-294)||(23344345-23344379)
chr1 (216-294)||(41803973-41804051)
chr1 (260-294)||(48228251-48228285)
chr1 (261-294)||(29760604-29760637)
chr1 (222-286)||(16530613-16530677)
[»] chr8 (13 HSPs)
chr8 (224-294)||(26455615-26455686)
chr8 (220-294)||(41276825-41276900)
chr8 (217-294)||(42605174-42605251)
chr8 (216-286)||(18438689-18438759)
chr8 (221-294)||(28168542-28168615)
chr8 (216-294)||(22550804-22550883)
chr8 (259-294)||(26488406-26488441)
chr8 (224-286)||(38872879-38872940)
chr8 (240-294)||(44052165-44052219)
chr8 (260-294)||(483915-483949)
chr8 (260-294)||(22519502-22519536)
chr8 (260-294)||(41016513-41016547)
chr8 (261-294)||(40704099-40704132)
[»] scaffold0176 (2 HSPs)
scaffold0176 (219-294)||(3523-3599)
scaffold0176 (216-294)||(593-671)
[»] scaffold0192 (1 HSPs)
scaffold0192 (217-286)||(16458-16527)
[»] scaffold0859 (1 HSPs)
scaffold0859 (240-286)||(2115-2161)
[»] scaffold0618 (1 HSPs)
scaffold0618 (216-286)||(3940-4010)
[»] scaffold0258 (1 HSPs)
scaffold0258 (217-286)||(10255-10324)
[»] scaffold0094 (1 HSPs)
scaffold0094 (259-294)||(144-179)
[»] scaffold0494 (1 HSPs)
scaffold0494 (260-294)||(5430-5464)
[»] scaffold0199 (1 HSPs)
scaffold0199 (240-294)||(10758-10811)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 44490161 - 44490335
Alignment:
Q  1 tgttgtgagggtttatggaagaagggaggaatagggttcgtaaatggatggatctgttgttgcgaggaggaggagaagcgtcgcacnnnnnnnnnnnnng 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |    
T  44490161 tgttgtgagggtttatggaggaagggaggaatagggttcgtaaatggatggatctgttgttgcgaggaggaggagaagcgtcgcac--gagagagagagg 44490258  T
Q  101 caatgatttggggacgtgatggttgaagtacggataactattttgttttacattatttttactgttggaatgaattc 177  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44490259 gaatgatttggggacgtgatggttgaagtacggataactattttgttttacattatttttactgttcgaatgaattc 44490335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 294
Target Start/End: Original strand, 44490363 - 44490479
Alignment:
Q  178 taaggttgagacacacgactaaaataagattttgtttgctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaac 277  Q
    ||||| |||||||||||| ||||||| | |||||  | ||||| |||||||||||||||||||||||||||||  ||||||  |||| ||||||||||||    
T  44490363 taaggctgagacacacgaataaaatacgtttttgcctcctcggtagttaactgccgaaaatttgttataagaacggaatagatatagcagtttccaaaac 44490462  T
Q  278 tccattgttacgttttt 294  Q
    | |||||||||||||||    
T  44490463 ttcattgttacgttttt 44490479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 2432955 - 2432891
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||    
T  2432955 agttaactgccgaaaattggttataagaatagaacagacataggagtttccaaaactccattgtt 2432891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 34645617 - 34645694
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||| ||||||||||| | || || ||||||||||||| |||||||||||||||||||||    
T  34645617 ctcggcagttaactgccgaaaatctgttataagaacataacagacataggagtttcc-aaactccattgttacgttttt 34645694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 45098864 - 45098938
Alignment:
Q  220 gcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||| |||||||||||||||||||||| | || |   ||||||||||||||||||||||||||||||||||    
T  45098864 gcagttaattgccgaaaatttgttataagaacaaaaaaaatataggagtttccaaaactccattgttacgttttt 45098938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 41579742 - 41579674
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattg 284  Q
    ||||| |||||||||||||||||| |||||||||| ||||  | |||||||||||||||||||||||||    
T  41579742 ctcggtagttaactgccgaaaattggttataagaacagaactgacataggagtttccaaaactccattg 41579674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 43571693 - 43571625
Alignment:
Q  226 aactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||| |||| | |||| || ||||||||||| |||||||||||||||||||||||    
T  43571693 aactgccgaaaatttgttgtaagtacagaacagacataggagttttcaaaactccattgttacgttttt 43571625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 19440311 - 19440390
Alignment:
Q  216 ctcggcagttaactgccgaaaatt-tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||||| | ||||||||||| |||| || |||| |||||||||||||||||||||| |||||||    
T  19440311 ctcggtagttaactgccgaaaaatatgttataagaacagaacagacataagagtttccaaaactccattgttgcgttttt 19440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 43478823 - 43478769
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||||||||||    
T  43478823 tgttataagaacagaacagacataggagtttccaaaactccattgttacgttttt 43478769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 2267111 - 2267189
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||| ||  ||||||||||| |||| || ||||||||||||||||||||||||||| |||||||    
T  2267111 ctcggtagttaactgccgaagaaaatgttataagaacagaacag-cataggagtttccaaaactccattgttgcgttttt 2267189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 13894285 - 13894360
Alignment:
Q  220 gcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| ||| |||  ||||||||||| |||| || |||||||||||||||||||||||||||| ||||||    
T  13894285 gcagttaactgtcgagaaaaatgttataagaacagaacagacataggagtttccaaaactccattgttatgttttt 13894360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 55267474 - 55267549
Alignment:
Q  220 gcagttaactgccgaaaatt-tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||| ||||||||| | ||||||||||||| || |  ||||||||||||||||||||||||||| |||||||    
T  55267474 gcagttaattgccgaaaaatatgttataagaatataacaaacataggagtttccaaaactccattgttgcgttttt 55267549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 7247878 - 7247808
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||| ||||||||| |||||||| |||||||||| | || || ||||| |||||||||||||||||||||    
T  7247878 ctcggtagttaactgtcgaaaattggttataagaacataacagacatagtagtttccaaaactccattgtt 7247808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 16484449 - 16484395
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| |||| || |||||||||||| ||||||||||||||||||||||    
T  16484449 tgttataagaacagaacagacataggagtttcaaaaactccattgttacgttttt 16484395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 20374301 - 20374355
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| |||| || ||||||||||||||||||||||||||| |||||||    
T  20374301 tgttataagaacagaacagacataggagtttccaaaactccattgttgcgttttt 20374355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 51693960 - 51694012
Alignment:
Q  242 ttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||| |||||    
T  51693960 ttataagaatagaacagacataggagttttcaaaactccattgttacattttt 51694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 4002773 - 4002847
Alignment:
Q  220 gcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||  ||  ||||||||||| |||| || ||||||||||||||||||||||||||| |||||||    
T  4002773 gcagttaactgccgaggaaaatgttataagaacagaacag-cataggagtttccaaaactccattgttgcgttttt 4002847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 34691680 - 34691759
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  ||  ||||||||||| |||| || |||| |||||||||||||||||||||| |||||||    
T  34691680 ctcggtagttaactgccgaggaaaatgttataagaacagaacagacatatgagtttccaaaactccattgttgcgttttt 34691759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 42321826 - 42321861
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  42321826 gcataggagtttccaaaactccattgttacgttttt 42321861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 50457594 - 50457629
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  50457594 gcataggagtttccaaaactccattgttacgttttt 50457629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 46344992 - 46345062
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||| |||||| ||| | ||||| |||||||||| |||| || ||||||||||||||||||| |||||||    
T  46344992 ctcggtagttaattgctgcaaattggttataagaacagaacagacataggagtttccaaaacttcattgtt 46345062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 49217190 - 49217224
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||||||||    
T  49217190 cataggagtttccaaaactccattgttacgttttt 49217224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 51017157 - 51017123
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||||||||    
T  51017157 cataggagtttccaaaactccattgttacgttttt 51017123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 2645554 - 2645589
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||| |||||||    
T  2645554 gcataggagtttccaaaactccattgttgcgttttt 2645589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 11377344 - 11377379
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11377344 gcataggagtttccaaaactcaattgttacgttttt 11377379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 44929337 - 44929302
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||| |||||    
T  44929337 gcataggagtttccaaaactccattgttacattttt 44929302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 50998672 - 50998594
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||| ||  ||||||||||| | || |  ||||||||||||||||||||||||||| |||||||    
T  50998672 ctcggtagttaactgccgaagaaaatgttataagaacataacaa-cataggagtttccaaaactccattgttgcgttttt 50998594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 2950465 - 2950499
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  2950465 cataggagtttccaaaactccattgttgcgttttt 2950499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 46406565 - 46406531
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  46406565 cataggagtttccaaaactccattgttgcgttttt 46406531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 49138713 - 49138747
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  49138713 cataggagtttccaaaactccattgttgcgttttt 49138747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 52567858 - 52567892
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  52567858 cataggagtttccaaaactccattgttgcgttttt 52567892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 54392002 - 54391968
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  54392002 cataggagtttccaaaactccattgttgcgttttt 54391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 52567721 - 52567778
Alignment:
Q  178 taaggttgagacacacgactaaaataagattttgtttgctcggcagttaactgccgaa 235  Q
    ||||| |||| ||||||| ||||||| |||||||  | ||||||||||||||||||||    
T  52567721 taaggctgaggcacacgagtaaaatacgattttgccttctcggcagttaactgccgaa 52567778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 18442138 - 18442062
Alignment:
Q  218 cggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||| ||||  || ||||||||||| | || |  |||||||||||| |||||| ||||||| |||||||    
T  18442138 cggcagttaactaccgatgatctgttataagaacataacaaacataggagtttctaaaactgcattgttgcgttttt 18442062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 19487212 - 19487136
Alignment:
Q  218 cggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||| ||||  || ||||||||||| | || |  |||||||||||| |||||| ||||||| |||||||    
T  19487212 cggcagttaactaccgatgatctgttataagaacataacaaacataggagtttctaaaactgcattgttgcgttttt 19487136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 41805674 - 41805622
Alignment:
Q  234 aaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||| ||||||||||| |||| || |||| ||||||| ||||||||||||||    
T  41805674 aaaatatgttataagaacagaacagacataagagtttctaaaactccattgtt 41805622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 46860566 - 46860636
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  46860566 ctcggcagttaactgccgaaaatttgttataagaacagaacagacataggagtttccaaaactccattgtt 46860636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 178 - 294
Target Start/End: Original strand, 28112800 - 28112916
Alignment:
Q  178 taaggttgagacacacgactaaaataagattttgtttgctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaac 277  Q
    |||||||||||||||| | ||||||| | |||||    ||||||||||||||| ||||||||||||||||||| | || || ||||||||||||||||||    
T  28112800 taaggttgagacacacaagtaaaatacgcttttgccctctcggcagttaactgtcgaaaatttgttataagaacataacagacataggagtttccaaaac 28112899  T
Q  278 tccattgttacgttttt 294  Q
    || |||||||| |||||    
T  28112900 tctattgttacattttt 28112916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 10225861 - 10225783
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||| |||||||    
T  10225861 ctcggcagttaactaccgaaaatttgttataagaatagaaccaacataggagtttccaaaactccattgttgcgttttt 10225783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 40590606 - 40590489
Alignment:
Q  178 taaggttgagacacacgactaaaataagattttgtttgctcggcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaa 276  Q
    ||||| ||||| |||||| ||||||| | |||||    ||||||||||||||||||| |||  ||||||||||| |||| || |||||||||||||||||    
T  40590606 taaggctgagaaacacgaataaaatacgtttttgccccctcggcagttaactgccgagaaaaatgttataagaacagaacagacataggagtttccaaaa 40590507  T
Q  277 ctccattgttacgttttt 294  Q
     ||||||| |||||||||    
T  40590506 ttccattgctacgttttt 40590489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 36392186 - 36392258
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||| |||||||||||||||| | | || || |||||||||||||||||||||||||||||| ||||    
T  36392186 agttaactgcagaaaatttgttataagtacataacagacataggagtttccaaaactccattgttacgatttt 36392258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 45361682 - 45361757
Alignment:
Q  220 gcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||| |||  ||||||||||| |||| || ||||||||||||||||||||||||||||| |||||    
T  45361682 gcagttaactgccgagaaaaatgttataagaacagaacagacataggagtttccaaaactccattgttacattttt 45361757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 34142674 - 34142598
Alignment:
Q  219 ggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||  ||  ||||||||||||| || || ||||||||||||||||||||||||||| |||||||    
T  34142674 ggcagttaactgccgaggaaaatgttataagaatataacagacataggagtttccaaaactccattgttgcgttttt 34142598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 41623878 - 41623814
Alignment:
Q  230 gccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||| | |||| || |||||||||||| ||||||||||||| ||||||||    
T  41623878 gccgaaaatttgttataagtacagaacagacataggagtttcgaaaactccattgtcacgttttt 41623814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 48272444 - 48272380
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactcc 280  Q
    ||||| ||||||||| |||||||| |||||||||| ||||||| ||||| |||||||||||||||    
T  48272444 ctcggtagttaactgtcgaaaattggttataagaacagaatagacatagtagtttccaaaactcc 48272380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 42684208 - 42684145
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||||||||| ||||||||||||||||| | || || |||| ||||||||||||||||||||||    
T  42684208 agttaactgcc-aaaatttgttataagaacataacagacatatgagtttccaaaactccattgtt 42684145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 34139746 - 34139668
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||  ||  ||||||||||| |||| |  ||||||||||||||||||||||||||| |||||||    
T  34139746 ctcggcagttaactgccgaggaaaatgttataagaacagaacat-cataggagtttccaaaactccattgttgcgttttt 34139668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 46596960 - 46597019
Alignment:
Q  235 aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| ||||||||||| |||| || ||||| ||||||||||||||||||||| |||||||    
T  46596960 aaatatgttataagaacagaacagacatagaagtttccaaaactccattgttgcgttttt 46597019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 43349739 - 43349773
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||||||||    
T  43349739 cataggagtttccaaaactccattgttacgttttt 43349773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 48314736 - 48314798
Alignment:
Q  224 ttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||||||| |||||| |||||||||| | || || ||||||||||||||||| |||||||||    
T  48314736 ttaactgccaaaaattggttataagaacataacagacataggagtttccaaaattccattgtt 48314798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 20876415 - 20876448
Alignment:
Q  261 ataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||    
T  20876415 ataggagtttccaaaactccattgttacgttttt 20876448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 17185044 - 17185009
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||| |||||    
T  17185044 gcataggagtttccaaaactccattgttacattttt 17185009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 21185693 - 21185760
Alignment:
Q  219 ggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    |||| |||||||||||||||| |||||||||| |||| |  |||| || ||| |||||||||||||||    
T  21185693 ggcaattaactgccgaaaattggttataagaacagaacacacataagatttttcaaaactccattgtt 21185760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 42736844 - 42736809
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| |||||||||||||||||||||||||||||||    
T  42736844 gcatcggagtttccaaaactccattgttacgttttt 42736809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 9365778 - 9365812
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  9365778 cataggagtttccaaaactccattgttgcgttttt 9365812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 15070454 - 15070488
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  15070454 cataggagtttccaaaactccattgttgcgttttt 15070488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 20566307 - 20566273
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  20566307 cataggagtttccaaaactccattgttgcgttttt 20566273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 22292710 - 22292676
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||| |||||||||||||||||    
T  22292710 cataggagtttccaaaaatccattgttacgttttt 22292676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 42503916 - 42503950
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  42503916 cataggagtttccaaaactccattgttgcgttttt 42503950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 48194625 - 48194571
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| | || || |||||||||||||||||||| |||||| |||||||    
T  48194625 tgttataagaacataacagacataggagtttccaaaactctattgttgcgttttt 48194571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 33383860 - 33383938
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  33383860 ctcggaagttaactgccgaaattttgttataagaagagaatagacataggagtttccaaaactccattgttatgttttt 33383938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 51426598 - 51426670
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| | |||| || ||| |||||||||||||||||||||||||||||||    
T  51426598 agttaactgccgaaaatttgttataagtacagaacagacattggagtttccaaaactccattgttacgttttt 51426670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 44558704 - 44558782
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||| ||||||||||||||||||||||| | |||| || |||||||||||||||||||||||| ||||||||||    
T  44558704 ctcggtagtaaactgccgaaaatttgttataagtacagaacagacataggagtttccaaaactccattattacgttttt 44558782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 1044559 - 1044484
Alignment:
Q  220 gcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||  ||  |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  1044559 gcagttaactgccgaggaaaatgttataagaatagaacagacataggagtttccaaaactccattgttacgttttt 1044484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 9491299 - 9491224
Alignment:
Q  220 gcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||| ||  ||||||||||| |||| || |||||||||||||||||||||||||||||||||||    
T  9491299 gcagttaactgccgaagaaagtgttataagaacagaacagacataggagtttccaaaactccattgttacgttttt 9491224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 49572918 - 49572840
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||| ||||| ||||||||||||||||| | |||| || ||||||| |||||||||||||||||||||||||||    
T  49572918 ctcggtagtaaactgtcgaaaatttgttataagtacagaacagacataggaatttccaaaactccattgttacgttttt 49572840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 4783702 - 4783779
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||| ||| |||| |||||| |||| |  |||||||||||||||||||||||||||| ||||||    
T  4783702 tcggcagttaactgccgataatctgttttaagaacagaacaaacataggagtttccaaaactccattgttaggttttt 4783779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 37959737 - 37959668
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    |||| |||||||||||||||||| |||||||||| | ||||| ||| |||||||||||||||||||||||    
T  37959737 tcggtagttaactgccgaaaattggttataagaacataatagacatgggagtttccaaaactccattgtt 37959668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 4909879 - 4909955
Alignment:
Q  218 cggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||  || ||||||||||| |||| |||||||| |||||||||||| |||||||| |||||||    
T  4909879 cggcagttaactgccgatgatctgttataagaacagaacaggcatagaagtttccaaaacaccattgttgcgttttt 4909955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 56140686 - 56140630
Alignment:
Q  238 tttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||||||||||||    
T  56140686 tttgttataagaacagaacagacataggagtttccaaaactccattgttacgttttt 56140630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 955847 - 955924
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||||||||||||||||||||||||||||| |||| || ||| |||||||| |||| | |||||||||||||||    
T  955847 ctcggtagttaactgccgaaaatttgttataagaacagaacagacat-ggagtttctaaaaattcattgttacgttttt 955924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 37868283 - 37868208
Alignment:
Q  220 gcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||| |||  ||||||||||| |||| ||  |||||||||||||||||||||||||||| |||||    
T  37868283 gcagttaactgccgagaaaaatgttataagaacagaacagatataggagtttccaaaactccattgttacattttt 37868208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 6280913 - 6280991
Alignment:
Q  217 tcggcagttaactgccg-aaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| ||||||||| || ||||| ||||||||||||| || ||  |||||||||||||||||| |||||||||||||||    
T  6280913 tcggtagttaactgtcggaaaatatgttataagaatataaaagatataggagtttccaaaacttcattgttacgttttt 6280991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 34151669 - 34151747
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||| ||||||||||||||||||||||| | |||| ||  || |||||||| ||||||||||||||| ||||||    
T  34151669 ctcggtagtaaactgccgaaaatttgttataagtacagaacagatatgggagtttctaaaactccattgttatgttttt 34151747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 21410193 - 21410265
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||   || ||||||||||| | || || ||||||||||||||||||||||||||| |||||||    
T  21410193 agttaactgccgttgatctgttataagaacaaaacagacataggagtttccaaaactccattgttgcgttttt 21410265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 36774808 - 36774843
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  36774808 gcataggagtttccaaaactccattgttacgttttt 36774843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 39590586 - 39590507
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  ||  ||||||||||| |||| || |||||||||||||||||||| |||||| |||||||    
T  39590586 ctcggtagttaactgccgatgaaaatgttataagaacagaacagacataggagtttccaaaactcaattgttgcgttttt 39590507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 43887597 - 43887632
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  43887597 gcataggagtttccaaaactccattgttacgttttt 43887632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 28084007 - 28083930
Alignment:
Q  217 tcggcagttaactgccgaaaatt-tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| ||||||||||||||||   ||||||||||| | || || ||||||||||||||||||||||||||| |||||||    
T  28084007 tcggtagttaactgccgaaaaaaatgttataagaacataacag-cataggagtttccaaaactccattgttgcgttttt 28083930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 293
Target Start/End: Original strand, 51026153 - 51026186
Alignment:
Q  260 cataggagtttccaaaactccattgttacgtttt 293  Q
    ||||||||||||||||||||||||||||||||||    
T  51026153 cataggagtttccaaaactccattgttacgtttt 51026186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 21015837 - 21015872
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||| |||||||    
T  21015837 gcataggagtttccaaaactccattgttgcgttttt 21015872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 22438494 - 22438459
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||| |||||||||||||||||||||||||||||    
T  22438494 gcatagaagtttccaaaactccattgttacgttttt 22438459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 55799504 - 55799469
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||| |||||||    
T  55799504 gcataggagtttccaaaactccattgttgcgttttt 55799469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 6175976 - 6176010
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  6175976 cataggagtttccaaaactccattgttgcgttttt 6176010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 40352434 - 40352468
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgtttt 293  Q
    |||||||||||||||||||||||||||| ||||||    
T  40352434 gcataggagtttccaaaactccattgttgcgtttt 40352468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 41793463 - 41793497
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  41793463 cataggagtttccaaaactccattgttgcgttttt 41793497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 49096292 - 49096258
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  49096292 cataggagtttccaaaactccattgttgcgttttt 49096258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 21171305 - 21171257
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacg 289  Q
    ||||||| ||||||||||   |||||||||||||||||||||||||||||    
T  21171305 tgttatatgaatagaataat-ataggagtttccaaaactccattgttacg 21171257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 24076878 - 24076809
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||||||||||| ||||   | ||||||||||| | || || ||||||| |||||||||||||||||||    
T  24076878 tcggcagttaactaccgatgctctgttataagaacataacagacataggaatttccaaaactccattgtt 24076809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 8268767 - 8268689
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||| |||||||    
T  8268767 ctcggcagttaactgccgaaaatttgttataagaacaaaatagacatacgagtttccaaaactccattgttgcgttttt 8268689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 35493358 - 35493281
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| ||||||||||||||||||||||||||||| |||| || |||  ||||||||||||||||||||||||||||||    
T  35493358 tcggtagttaactgccgaaaatttgttataagaacagaacagacatgagagtttccaaaactccattgttacgttttt 35493281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 19470017 - 19470091
Alignment:
Q  220 gcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||| |||| |  ||||||| ||||||||||||||||||||| |||||    
T  19470017 gcagttaactgccgaaaatttgttataagaacagaacaaacataggaatttccaaaactccattgttacattttt 19470091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 23409519 - 23409441
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||| ||||||||||||||||||||||| |  ||| || |||||||||||||||||||||||||||||||||||    
T  23409519 ctcggaagtaaactgccgaaaatttgttataagtacggaacagacataggagtttccaaaactccattgttacgttttt 23409441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 40675794 - 40675871
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| ||||||||||||||||||||||||||| |||||| || ||| ||||||||||||||| ||||||||| |||||    
T  40675794 tcggtagttaactgccgaaaatttgttataagtatagaacagacattggagtttccaaaactgcattgttacattttt 40675871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 3943210 - 3943131
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  || |||||||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  3943210 ctcggtagttaactgccgaggaaattgttataagaacagaacagacataggagttttcaaaactccattgttacgttttt 3943131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 43493292 - 43493224
Alignment:
Q  225 taactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||| ||||||||||||| |||| || |||||||||||| |||||||||||||||| |||||    
T  43493292 taactgccgaaa-tttgttataagaacagaacagacataggagtttcaaaaactccattgttacattttt 43493224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 16583609 - 16583545
Alignment:
Q  220 gcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccatt 283  Q
    ||||||||||||||| |||  ||||||||||| |||| || ||||||||||||||||||||||||    
T  16583609 gcagttaactgccgagaaaaatgttataagaacagaacagacataggagtttccaaaactccatt 16583545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 41497546 - 41497606
Alignment:
Q  234 aaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||||||||||| |||| || ||||||| ||||||||||||||||||| |||||||    
T  41497546 aaaatatgttataagaacagaacagacataggattttccaaaactccattgttgcgttttt 41497606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 10358896 - 10358930
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||||||||    
T  10358896 cataggagtttccaaaactccattgttacgttttt 10358930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 23719445 - 23719479
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||||||||    
T  23719445 cataggagtttccaaaactccattgttacgttttt 23719479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 24107117 - 24107151
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||||||||    
T  24107117 cataggagtttccaaaactccattgttacgttttt 24107151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 29090655 - 29090709
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| | || || |||| ||||||||||||||||||||||||||||||    
T  29090655 tgttataagaacaaaacagacatacgagtttccaaaactccattgttacgttttt 29090709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 34639331 - 34639253
Alignment:
Q  217 tcggcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| ||||||||||||| |||  ||||||||||| | || || ||||||||||||| ||||||||||||||| |||||    
T  34639331 tcgggagttaactgccgagaaaaatgttataagaacaaaacagacataggagtttcctaaactccattgttacattttt 34639253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 34520064 - 34520099
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||| |||||||||||||||||    
T  34520064 gcataggagtttccaaaaatccattgttacgttttt 34520099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 45435181 - 45435146
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||| |||||||    
T  45435181 gcataggagtttccaaaactccattgttgcgttttt 45435146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 3935962 - 3935996
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  3935962 cataggagtttccaaaactccattgttgcgttttt 3935996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 5422194 - 5422160
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| |||||||||||||||||||||||    
T  5422194 cataggagttttcaaaactccattgttacgttttt 5422160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 28477041 - 28477007
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  28477041 cataggagtttccaaaactccattgttgcgttttt 28477007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 37311062 - 37311096
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||| |||||||||||||||||    
T  37311062 cataggagtttccaaaaatccattgttacgttttt 37311096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 43984275 - 43984241
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  43984275 cataggagtttccaaaactccattgttgcgttttt 43984241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 2917744 - 2917808
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||||||| ||||||||||||||||| | |||| |   || |||||||||||||||| ||||||    
T  2917744 agttaactgtcgaaaatttgttataagtacagaacacaaattggagtttccaaaactctattgtt 2917808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 34801569 - 34801637
Alignment:
Q  226 aactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||    
T  34801569 aactgccgaaaatttgttataagtatagaaaagacataggagttttcaaaactccattgttacgttttt 34801637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 13404644 - 13404580
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    |||||||||||||||||| ||||||||||||||| |  |||| ||||||||||||||||||||||    
T  13404644 agttaactgccgaaaattggttataagaatagaacatacataagagtttccaaaactccattgtt 13404580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 13616296 - 13616374
Alignment:
Q  217 tcggcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| ||||||||| ||| |||| ||||||||||| |||| || ||||||||||||||||||||||||||| |||||||    
T  13616296 tcggtagttaactgtcgagaaatatgttataagaacagaacagacataggagtttccaaaactccattgttgcgttttt 13616374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 29076341 - 29076263
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  |  ||||||||||| | || || |||||||||||||||||||||||||||||||||||    
T  29076341 ctcggtagttaactgccgaggaaatgttataagaacaaaacagacataggagtttccaaaactccattgttacgttttt 29076263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 29109874 - 29109796
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  |  ||||||||||| | || || |||||||||||||||||||||||||||||||||||    
T  29109874 ctcggtagttaactgccgaggaaatgttataagaacaaaacagacataggagtttccaaaactccattgttacgttttt 29109796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 29111314 - 29111236
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  |  ||||||||||| | || || |||||||||||||||||||||||||||||||||||    
T  29111314 ctcggtagttaactgccgaggaaatgttataagaacaaaacagacataggagtttccaaaactccattgttacgttttt 29111236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 14124735 - 14124658
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| |||||||| || ||| ||| ||||||||| ||||  | |||||||||||||||||||| ||||||||||||||    
T  14124735 tcggtagttaactaccaaaattttattataagaacagaactgacataggagtttccaaaactctattgttacgttttt 14124658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 35019631 - 35019710
Alignment:
Q  216 ctcggcagttaactgccgaaaatt-tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||||| | |||||||| || | || || ||| ||||||||||||||||||||||| |||||||    
T  35019631 ctcggtagttaactgccgaaaaatatgttataataacataacagacatcggagtttccaaaactccattgttgcgttttt 35019710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 17126964 - 17126912
Alignment:
Q  242 ttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||| |||| || ||||||||||||||||||||||| ||| |||||||    
T  17126964 ttataagaacagaacagacataggagtttccaaaactccatcgttgcgttttt 17126912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 29068284 - 29068205
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  ||  ||||||||||| | || |  |||||||||||| ||||||||||||||||||||||    
T  29068284 ctcggtagttaactgccgaggaaaatgttataagaacaaaacaaacataggagtttctaaaactccattgttacgttttt 29068205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 29083531 - 29083452
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  ||  ||||||||||| | || |  |||||||||||| ||||||||||||||||||||||    
T  29083531 ctcggtagttaactgccgaggaaaatgttataagaacaaaacaaacataggagtttctaaaactccattgttacgttttt 29083452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 32691283 - 32691318
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||| |||||||    
T  32691283 gcataggagtttccaaaactccattgttgcgttttt 32691318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 11694001 - 11693967
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  11694001 cataggagtttccaaaactccattgttgcgttttt 11693967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 12398659 - 12398626
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttt 292  Q
    |||||||||||| |||||||||||||||||||||    
T  12398659 gcataggagttttcaaaactccattgttacgttt 12398626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 6320604 - 6320552
Alignment:
Q  178 taaggttgagacacacgactaaaataagattttgtttgctcggcagttaactg 230  Q
    ||||||||||| |||||| ||||||| | |||||| | |||||||||||||||    
T  6320604 taaggttgagaaacacgaataaaatatgtttttgtctcctcggcagttaactg 6320552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 25499899 - 25499827
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||| |||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |||||    
T  25499899 agttaagtgccgaaaatttgttataagaacagaacagacataggagtttccaaaactccattgttacattttt 25499827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 3603166 - 3603096
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||| ||||||||||||||||||  ||||||||| |||| || |||||||||||||||||||||||||||    
T  3603166 ctcggtagttaactgccgaaaattgattataagaacagaacagacataggagtttccaaaactccattgtt 3603096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 18310061 - 18309995
Alignment:
Q  220 gcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    |||||||||||||||||||| |||||||||| | || || |||||||||||||||||||||||||||    
T  18310061 gcagttaactgccgaaaattggttataagaacataacagacataggagtttccaaaactccattgtt 18309995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 34682312 - 34682390
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||| |||||| ||||||||||| | |||  || |||| ||||||||||||||||||||||||||||||    
T  34682312 ctcgggagttaactaccgaaagtttgttataagtacagaccagacatatgagtttccaaaactccattgttacgttttt 34682390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 35567037 - 35566967
Alignment:
Q  224 ttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||| ||||||||||||||||||| | || || ||||| ||||||||||||||||||||| |||||||    
T  35567037 ttaactgtcgaaaatttgttataagaacaaaacagacatagaagtttccaaaactccattgttgcgttttt 35566967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 30887371 - 30887317
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| | || || |||||||||||||||||||||||||||||||||||    
T  30887371 tgttataagaacataacagacataggagtttccaaaactccattgttacgttttt 30887317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 540981 - 541060
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  ||  ||||||||||| |||| || ||||||||||||||||||||| ||||| |||||||    
T  540981 ctcggtagttaactgccgaggaaaatgttataagaacagaacagacataggagtttccaaaactcccttgttgcgttttt 541060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 7483856 - 7483891
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  7483856 gcataggagtttccaaaactccattgttacgttttt 7483891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 11348515 - 11348441
Alignment:
Q  220 gcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||  ||  ||||||||||| |||| || ||||||||||||||||||||||||||| |||||||    
T  11348515 gcagttaactgccgaggaaaatgttataagaacagaacag-cataggagtttccaaaactccattgttgcgttttt 11348441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 36348728 - 36348763
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  36348728 gcataggagtttccaaaactccattgttacgttttt 36348763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 41798898 - 41798952
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| | || |  |||||||||||||||||||||||||||||||||||    
T  41798898 tgttataagaacataacaaacataggagtttccaaaactccattgttacgttttt 41798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 7401881 - 7401816
Alignment:
Q  221 cagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    |||||||||| ||| | | ||||||||||| |||| || ||||||| |||||||||||||||||||    
T  7401881 cagttaactgtcgatactctgttataagaacagaacagacataggaatttccaaaactccattgtt 7401816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 8574801 - 8574853
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgtttt 293  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||| ||||||    
T  8574801 tgttataagaatagaactg-cataggagtttccaaaactccattgttgcgtttt 8574853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 1973230 - 1973198
Alignment:
Q  262 taggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||||||    
T  1973230 taggagtttccaaaactccattgttacgttttt 1973198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 1398659 - 1398730
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtta 287  Q
    ||||| ||||||||| ||||  ||| ||||||||| ||||  | ||||||||||| ||||||||||||||||    
T  1398659 ctcggtagttaactgtcgaattttttttataagaacagaactgacataggagttttcaaaactccattgtta 1398730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 1696599 - 1696564
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||| |||||||||||||    
T  1696599 gcataggagtttccaaaactcctttgttacgttttt 1696564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 8539517 - 8539482
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||| |||||||    
T  8539517 gcataggagtttccaaaactccattgttgcgttttt 8539482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 27660038 - 27660073
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||| |||||||    
T  27660038 gcataggagtttccaaaactccattgttgcgttttt 27660073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 41088232 - 41088267
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41088232 gcataggagttaccaaaactccattgttacgttttt 41088267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 5895 - 5929
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  5895 cataggagtttccaaaactccattgttgcgttttt 5929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 11028978 - 11028944
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  11028978 cataggagtttccaaaactccattgttgcgttttt 11028944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 19035337 - 19035371
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  19035337 cataggagtttccaaaactccattgttgcgttttt 19035371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 38855685 - 38855651
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  38855685 cataggagtttccaaaactccattgttgcgttttt 38855651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 294
Target Start/End: Complemental strand, 40937283 - 40937253
Alignment:
Q  264 ggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||||    
T  40937283 ggagtttccaaaactccattgttacgttttt 40937253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 41201783 - 41201861
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||||||||| ||||||||| ||||||||| | || || ||||| || || |||||||  ||||||||||||||    
T  41201783 ctcggtagttaactgtcgaaaatttattataagaacataacagacatagaagatttcaaaactttattgttacgttttt 41201861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 20200160 - 20200097
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||||||||||||| || ||| |||||| |||| |   ||||||||||||||||||||||||||    
T  20200160 agttaactgccgaaa-ttggttgtaagaacagaacaaatataggagtttccaaaactccattgtt 20200097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 27485092 - 27485167
Alignment:
Q  220 gcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||| |||  |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  27485092 gcagttaactgccgagaaaaatgttataagaatagaacagacataggagtttccaaaactccattgttacgttttt 27485167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 49398487 - 49398410
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||| |||||||||||||||||||||||||||| | || || ||||||||||||||||||| |||||||||||||||    
T  49398487 ctcggctgttaactgccgaaaatttgttataagaacataacagacataggagtttccaaaact-cattgttacgttttt 49398410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 36911708 - 36911636
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||| |||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||| |||||    
T  36911708 agttaattgccgaaaatttgttataagaacataatagacatatgagtttccaaaactccattgttacattttt 36911636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 6437557 - 6437487
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||    
T  6437557 ctcggtagttatctgccgaaaattggttataagaacagaacaggcataggagtttctaaaactccattgtt 6437487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 26633582 - 26633660
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||||||||||||||||||||||||||| | |||| |  ||| |||||||||||||||||| ||||||||||||    
T  26633582 ctcggtagttaactgccgaaaatttgttataagtacagaacatacattggagtttccaaaactccaatgttacgttttt 26633660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 35524798 - 35524872
Alignment:
Q  220 gcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||| |||||||||||||||||||||| |||| || |||  ||||||| ||||||||||||||||||||||    
T  35524798 gcagttaattgccgaaaatttgttataagaacagaacagacatgagagtttcaaaaactccattgttacgttttt 35524872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 44336304 - 44336383
Alignment:
Q  216 ctcggcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||||||||||||| |||  ||||||||||| |||| || |||||||||||||||||||| ||||||||||||||    
T  44336304 ctcggtagttaactgccgagaaaaatgttataagaacagaacagacataggagtttccaaaactcaattgttacgttttt 44336383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 49924912 - 49924990
Alignment:
Q  217 tcggcagttaactgccgaaaatt-tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| |||||||||||||||| | ||||||||||| | || || ||||||||||||||||||||||||||| |||||||    
T  49924912 tcgggagttaactgccgaaaaatatgttataagaacaaaacagacataggagtttccaaaactccattgttgcgttttt 49924990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 18975137 - 18975074
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactcc 280  Q
    |||| |||||||||||||||||| |||||||||| |||| || |||||||||| ||||||||||    
T  18975137 tcggtagttaactgccgaaaattggttataagaacagaacagacataggagttaccaaaactcc 18975074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 13149052 - 13148987
Alignment:
Q  224 ttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| ||||||||||||||| |||     |||||||||||||||||||||||||||| ||||||    
T  13149052 ttaactgccgataatttgttataagaacaga-----cataggagtttccaaaactccattgttatgttttt 13148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 14172163 - 14172221
Alignment:
Q  236 aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||| |||| || |||||||||||||||||||  ||||||||||||||    
T  14172163 aatttgttataagaacagaacagacataggagtttccaaaactttattgttacgttttt 14172221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 44598899 - 44598845
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| |||| || |||||||||||| ||||||||||||||||||||||    
T  44598899 tgttataagaacagaacagacataggagtttcaaaaactccattgttacgttttt 44598845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 33285789 - 33285824
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  33285789 gcataggagtttccaaaactccattgttacgttttt 33285824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 39855588 - 39855623
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  39855588 gcataggagtttccaaaactccattgttacgttttt 39855623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 26497900 - 26497826
Alignment:
Q  220 gcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||   | ||||||||||| |||| |  ||||| |||||||||||||||| ||||||||||||    
T  26497900 gcagttaactgccgatgttctgttataagaacagaacatacatagaagtttccaaaactccagtgttacgttttt 26497826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 38043550 - 38043584
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||||||||||    
T  38043550 cataggagtttccaaaactccattgttacgttttt 38043584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 51271584 - 51271530
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| |||| || ||||||||||||||||||| ||||||| |||||||    
T  51271584 tgttataagaacagaacagacataggagtttccaaaacttcattgttgcgttttt 51271530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 12789809 - 12789842
Alignment:
Q  261 ataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||    
T  12789809 ataggagtttccaaaactccattgttacgttttt 12789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 24362344 - 24362419
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataag-aatagaataggcataggagtttccaaaactccattgttacgt 290  Q
    |||||||||||||||||||  || ||||||||| || | || || |||||||||||||||||||||  ||||||||    
T  24362344 ctcggcagttaactgccgatgatctgttataagaaaaaaaacagacataggagtttccaaaactcctctgttacgt 24362419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 29438030 - 29437959
Alignment:
Q  224 ttaactgccgaaaatt-tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||| | ||||||||||| | |   | ||||||||||||||||||||||||||| |||||||    
T  29438030 ttaactgccgaaaaatatgttataagaacacagcggacataggagtttccaaaactccattgttgcgttttt 29437959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 42570193 - 42570256
Alignment:
Q  232 cgaaaatttgttataagaatagaataggcata-ggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||| | |||| || |||  |||||||||||||||||||||||| ||||||    
T  42570193 cgaaaatttgttataagtacagaacagacatttggagtttccaaaactccattgttatgttttt 42570256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 49260027 - 49260062
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||| |||||||||||||||||||||||||||||    
T  49260027 gcatagcagtttccaaaactccattgttacgttttt 49260062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 49429136 - 49429101
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||| |||||||    
T  49429136 gcataggagtttccaaaactccattgttgcgttttt 49429101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 13633965 - 13633999
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  13633965 cataggagtttccaaaactccattgttgcgttttt 13633999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 23344379 - 23344345
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||| |||||||||||||||    
T  23344379 cataggagtttccaaaacttcattgttacgttttt 23344345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 41804051 - 41803973
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| ||||||||| ||||||||||||||||| | ||||    ||| || |||| ||||||||||||||||| |||||    
T  41804051 ctcggtagttaactgtcgaaaatttgttataagtacagaacgaacattggggttttcaaaactccattgttacattttt 41803973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 48228285 - 48228251
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  48228285 cataggagtttccaaaactccattgttgcgttttt 48228251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 29760604 - 29760637
Alignment:
Q  261 ataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||| |||||||||||||||||||||||    
T  29760604 ataggagttttcaaaactccattgttacgttttt 29760637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 16530613 - 16530677
Alignment:
Q  222 agttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||||||||||   || |||||||| ||  ||| || |||||||||||||||||||||||||||    
T  16530613 agttaactgccgctcatctgttataaaaacggaacagacataggagtttccaaaactccattgtt 16530677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 26455686 - 26455615
Alignment:
Q  224 ttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| |||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  26455686 ttaactgccgagaaaaatgttataagaacagaataggcataggagtttccaaaactccattgttacattttt 26455615  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 41276900 - 41276825
Alignment:
Q  220 gcagttaactgccga-aaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||| |||  | ||||||||| |||| || |||||||||||||||||||||||||||||||||||    
T  41276900 gcagttaactgccgagaaaaatattataagaacagaacagacataggagtttccaaaactccattgttacgttttt 41276825  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 42605251 - 42605174
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||| ||||||||||||||||| ||||||||||| | || ||  |||| ||||||||||||||||||||| |||||||    
T  42605251 tcggtagttaactgccgaaaatatgttataagaacataacagatatagtagtttccaaaactccattgttgcgttttt 42605174  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 18438689 - 18438759
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||| |||||||||||||||||| |||||||||| | || || | ||||||| |||||||||||||||||    
T  18438689 ctcgggagttaactgccgaaaattggttataagaacataacagacgtaggagtgtccaaaactccattgtt 18438759  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 28168615 - 28168542
Alignment:
Q  221 cagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||  ||||||||||||||||||| |||| || |||| |||||| ||||||| ||||||| |||||||    
T  28168615 cagttaactatcgaaaatttgttataagaacagaacagacatatgagttttcaaaacttcattgttgcgttttt 28168542  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 22550883 - 22550804
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||| |||||||||||||  ||  ||||||||||| ||||  | ||||||||||||||||||||||||||| |||||||    
T  22550883 ctcggtagttaactgccgaggaaaatgttataagaacagaacggacataggagtttccaaaactccattgttgcgttttt 22550804  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 26488441 - 26488406
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  26488441 gcataggagtttccaaaactccattgttacgttttt 26488406  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 38872940 - 38872879
Alignment:
Q  224 ttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||||||| |||||| |||||||||| | || |||||||||||||| |||||||||||||||    
T  38872940 ttaactgccaaaaattggttataagaaca-aacaggcataggagttttcaaaactccattgtt 38872879  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 44052219 - 44052165
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||| ||  | |||||||||||||||||||| ||||||||||||||    
T  44052219 tgttataagaatataactgacataggagtttccaaaactctattgttacgttttt 44052165  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 483915 - 483949
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  483915 cataggagtttccaaaactccattgttgcgttttt 483949  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 22519536 - 22519502
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  22519536 cataggagtttccaaaactccattgttgcgttttt 22519502  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 41016513 - 41016547
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  41016513 cataggagtttccaaaactccattgttgcgttttt 41016547  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 40704132 - 40704099
Alignment:
Q  261 ataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||| |||||||    
T  40704132 ataggagtttccaaaactccattgttgcgttttt 40704099  T

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Target: scaffold0176 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 3599 - 3523
Alignment:
Q  219 ggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||  ||  ||||||||||||| || || ||||||||||||||||||||||||||| |||||||    
T  3599 ggcagttaactgccgaggaaaatgttataagaatataacagacataggagtttccaaaactccattgttgcgttttt 3523  T

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Target: scaffold0176; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 671 - 593
Alignment:
Q  216 ctcggcagttaactgccgaa-aatttgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||  ||  ||||||||||| |||| |  ||||||||||||||||||||||||||| |||||||    
T  671 ctcggcagttaactgccgaggaaaatgttataagaacagaacat-cataggagtttccaaaactccattgttgcgttttt 593  T

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Target: scaffold0192 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 16458 - 16527
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    |||| ||||||||||| ||||||| ||||||| | |||| || ||| |||||||||||||||||||||||    
T  16458 tcggtagttaactgccaaaaatttattataagtacagaacagacattggagtttccaaaactccattgtt 16527  T

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Target: scaffold0859 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 2161 - 2115
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||    
T  2161 tgttataagaacagaacagacataggagtttccaaaactccattgtt 2115  T

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Target: scaffold0618 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 3940 - 4010
Alignment:
Q  216 ctcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    ||||| |||||| ||| | ||||| |||||||||| |||| || ||||||||||||||||||| |||||||    
T  3940 ctcggtagttaattgctgcaaattggttataagaacagaacagacataggagtttccaaaacttcattgtt 4010  T

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Target: scaffold0258 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 10324 - 10255
Alignment:
Q  217 tcggcagttaactgccgaaaatttgttataagaatagaataggcataggagtttccaaaactccattgtt 286  Q
    |||||| |||||||||||   | ||||||||||||| || || ||||||| |||||||||||||||||||    
T  10324 tcggcacttaactgccgattctctgttataagaatataacagacataggaatttccaaaactccattgtt 10255  T

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Target: scaffold0094 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 179 - 144
Alignment:
Q  259 gcataggagtttccaaaactccattgttacgttttt 294  Q
    |||||||||||||||||||||||||||| |||||||    
T  179 gcataggagtttccaaaactccattgttgcgttttt 144  T

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Target: scaffold0494 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 5430 - 5464
Alignment:
Q  260 cataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  5430 cataggagtttccaaaactccattgttgcgttttt 5464  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 10758 - 10811
Alignment:
Q  240 tgttataagaatagaataggcataggagtttccaaaactccattgttacgttttt 294  Q
    ||||||||||| | ||||| ||||||||||||||||||| ||||||| |||||||    
T  10758 tgttataagaacataatag-cataggagtttccaaaacttcattgttgcgttttt 10811  T

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