View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5390_low_14 (Length: 251)

Name: NF5390_low_14
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5390_low_14
NF5390_low_14
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-211)||(41175-41384)
[»] chr4 (1 HSPs)
chr4 (94-202)||(25352429-25352537)
[»] chr3 (4 HSPs)
chr3 (133-203)||(34279567-34279637)
chr3 (133-199)||(7237770-7237836)
chr3 (133-206)||(37508248-37508321)
chr3 (132-176)||(51940774-51940818)
[»] chr5 (3 HSPs)
chr5 (133-200)||(8726164-8726231)
chr5 (133-200)||(31698289-31698356)
chr5 (133-200)||(42838134-42838201)
[»] chr6 (1 HSPs)
chr6 (133-200)||(22501886-22501953)
[»] chr7 (2 HSPs)
chr7 (133-200)||(24768355-24768422)
chr7 (133-206)||(36962953-36963026)
[»] chr2 (1 HSPs)
chr2 (133-206)||(16767907-16767980)


Alignment Details
Target: scaffold0057 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 41175 - 41384
Alignment:
Q  1 tatttatagggagataaattaaaatatgcccaaataacagtgctaaacacctattaacccttaaataattcattgttgtagtaaataaagaacaatgttt 100  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  41175 tatttataggtagataaattaaaatacgcccaaataacagtgctaaacacctattaacccttaaataattcagttttgtagtaaataaagaacaatgttt 41274  T
Q  101 catggataccctttttcttgcacctttcctgcacacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 200  Q
    ||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||    
T  41275 catggataccctttttcttgcacctctcttgtacacatgcccatgtggatggcagttatgtaatattgttaaaaagtcaggggtaaaaatgag-tttcac 41373  T
Q  201 atgtccatgtc 211  Q
    |||||||||||    
T  41374 atgtccatgtc 41384  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 25352537 - 25352429
Alignment:
Q  94 aatgtttcatggataccctttttcttgcacctttcctgcacacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgag 193  Q
    ||||||| ||| | ||||||||||||| |||| || || ||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  25352537 aatgtttgatgtacaccctttttcttgtacctctcttgtacacatgtctatgtggatggtagttttgtaatattgttaaaaaatcaggggtaaaaatgag 25352438  T
Q  194 atttcacat 202  Q
    |||||||||    
T  25352437 atttcacat 25352429  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 34279637 - 34279567
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcacatg 203  Q
    |||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  34279637 acacatgcccatgtggatggcaattttgtagtattgttaaaaagttaagggtaaaaatgagatttcacatg 34279567  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 7237836 - 7237770
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttca 199  Q
    |||| |||||||||||||||||| |||||||| ||||||||||   |||||||||| ||||||||||    
T  7237836 acacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttca 7237770  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 37508321 - 37508248
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcacatgtcc 206  Q
    |||| ||||||||||||||||||||||||||| | ||| || |   ||||| |||| |||||||||||||||||    
T  37508321 acacctgcccatgtggatggcagttttgtaatttcgttgaacatgcaggggcaaaattgagatttcacatgtcc 37508248  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 51940774 - 51940818
Alignment:
Q  132 cacacatgcccatgtggatggcagttttgtaatattgttaaaaaa 176  Q
    ||||| ||||||||||||||||||||||||||  |||| ||||||    
T  51940774 cacacttgcccatgtggatggcagttttgtaaatttgtcaaaaaa 51940818  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 8726231 - 8726164
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 200  Q
    |||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||    
T  8726231 acacatgcccatgtggatggcaattttgtagtattgttaaaaagttaagggtaaaaatgagatttcac 8726164  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 31698289 - 31698356
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 200  Q
    |||||||||||||||||||||| ||||||| | |||||||||| ||| ||||||||||||||||||||    
T  31698289 acacatgcccatgtggatggcaattttgtagtgttgttaaaaagttaagggtaaaaatgagatttcac 31698356  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 42838134 - 42838201
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 200  Q
    |||| |||||||||||||||||| |||||||| ||||||||||   |||||||||| |||||||||||    
T  42838134 acacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttcac 42838201  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 22501886 - 22501953
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 200  Q
    |||| |||||||||||||||||| |||||||| ||||||||||   |||||||||| |||||||||||    
T  22501886 acacctgcccatgtggatggcagctttgtaattttgttaaaaaggaaggggtaaaattgagatttcac 22501953  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 24768355 - 24768422
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcac 200  Q
    |||| |||||||||||||||||| |||||||| ||||||||||   || ||||||| |||||||||||    
T  24768355 acacctgcccatgtggatggcagctttgtaattttgttaaaaaggaagaggtaaaattgagatttcac 24768422  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 36963026 - 36962953
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcacatgtcc 206  Q
    |||| |||||||||||||| |||||||||||| | |||||| |   ||||| |||| |||||||||||||||||    
T  36963026 acacctgcccatgtggatgacagttttgtaatttcgttaaacaggcaggggcaaaattgagatttcacatgtcc 36962953  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 16767907 - 16767980
Alignment:
Q  133 acacatgcccatgtggatggcagttttgtaatattgttaaaaaattaggggtaaaaatgagatttcacatgtcc 206  Q
    |||| ||||||||||||||||||||||||||| | |||||| |   ||||| |||| ||||| |||||||||||    
T  16767907 acacctgcccatgtggatggcagttttgtaatttcgttaaataggcaggggcaaaattgagacttcacatgtcc 16767980  T

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