View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5390_low_15 (Length: 241)
Name: NF5390_low_15
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 29440408 - 29440253
Alignment:
| Q |
72 |
ttagaaaaatagtttgtttcaattgatacagaa---acagttcggtctactttatttcatattataacaatttggttcaaataaaactaataaaattgaa |
168 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||| || | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29440408 |
ttagaaaaatagtttggttcaattgatacagaagaaacaatttgatctactttattgcatattataacaatttggttcgaataaaactaataaaattgaa |
29440309 |
T |
|
| Q |
169 |
agcggttcaacaatttgaagaaacgattcggacattcggttcaggttgacatataa |
224 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29440308 |
agcggttcagcaatttgaagaatcgattcggacattcggttcaggttgacatataa |
29440253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 29440640 - 29440594
Alignment:
| Q |
25 |
caaaattgttgatgtattcaaaatttgaatcgctttcctttagaaaa |
71 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
29440640 |
caaaattgttgatgtattcgaaatttgaatcgcttttatttagaaaa |
29440594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University