View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5390_low_17 (Length: 227)
Name: NF5390_low_17
Description: NF5390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5390_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 33102714 - 33102513
Alignment:
| Q |
1 |
ttagctttaatactattgttttgtcgtgagaagagtttgagggatcatccatattaggccaaaagtaaaacacaagtggattgaacaccacatctttatc |
100 |
Q |
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| T |
33102714 |
ttagctttaatactattgttttgtcgtgagaagagtttgagggatcatccatattaagccaaaaataaaacacaagtggattgaacaccacatctttatc |
33102615 |
T |
|
| Q |
101 |
aaaatcataaggcattttgtttatggg-tcgttctacttttatcaatctcagtttttaaacaatgtgagacttatccctcacacttgccatattattcga |
199 |
Q |
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|||||||||||||||||| |||||||| | |||||||||||||| | |||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
33102614 |
aaaatcataaggcattttatttatgggttagttctacttttatcgacctcattttttaaacaatgtgagatttatccctcacacttgccacattattcga |
33102515 |
T |
|
| Q |
200 |
ca |
201 |
Q |
| |
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|| |
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| T |
33102514 |
ca |
33102513 |
T |
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